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The trace reconstruction problem studies the number of noisy samples needed to recover an unknown string $\boldsymbol{x}\in\{0,1\}^n$ with high probability, where the samples are independently obtained by passing $\boldsymbol{x}$ through a…

Information Theory · Computer Science 2021-04-15 Jin Sima , Jehoshua Bruck

Given a graph G and an integer k, the objective of the $\Pi$-Contraction problem is to check whether there exists at most k edges in G such that contracting them in G results in a graph satisfying the property $\Pi$. We investigate the…

Data Structures and Algorithms · Computer Science 2023-07-26 Dipayan Chakraborty , R. B. Sandeep

An L(2,1)-labeling of a graph $G$ is an assignment $f$ from the vertex set $V(G)$ to the set of nonnegative integers such that $|f(x)-f(y)|\ge 2$ if $x$ and $y$ are adjacent and $|f(x)-f(y)|\ge 1$ if $x$ and $y$ are at distance 2, for all…

Data Structures and Algorithms · Computer Science 2010-11-25 Toru Hasunuma , Toshimasa Ishii , Hirotaka Ono , Yushi Uno

In 'no common mechanism' (NCM) models of character evolution, each character can evolve on a phylogenetic tree under a partially or totally separate process (e.g. with its own branch lengths). In such cases, the usual conditions that…

Populations and Evolution · Quantitative Biology 2009-12-02 Mike Steel

Given an $n$-point metric space $(X,d_X)$, a tree cover $\mathcal{T}$ is a set of $|\mathcal{T}|=k$ trees on $X$ such that every pair of vertices in $X$ has a low-distortion path in one of the trees in $\mathcal{T}$. Tree covers have been…

Data Structures and Algorithms · Computer Science 2025-11-19 Yu Chen , Zihan Tan , Hangyu Xu

We consider learning the structures of Gaussian latent tree models with vector observations when a subset of them are arbitrarily corrupted. First, we present the sample complexities of Recursive Grouping (RG) and Chow-Liu Recursive…

Machine Learning · Statistics 2021-10-26 Fengzhuo Zhang , Vincent Y. F. Tan

Given a random binary picture $P_n$ of size $n$, i.e., an $n\times n$ grid filled with zeros and ones uniformly at random, when is it possible to reconstruct $P_n$ from its $k$-deck, i.e., the multiset of all its $k\times k$ subgrids? We…

Combinatorics · Mathematics 2025-01-29 Bhargav Narayanan , Corrine Yap

In this paper we establish an improved outer bound on the storage-repair-bandwidth tradeoff of regenerating codes under exact repair. The result shows that in particular, it is not possible to construct exact-repair regenerating codes that…

Information Theory · Computer Science 2013-12-23 Birenjith Sasidharan , Kaushik Senthoor , P. Vijay Kumar

We give a criterion of the form Q(d)c(M)<1 for the non-reconstructability of tree-indexed q-state Markov chains obtained by broadcasting a signal from the root with a given transition matrix M. Here c(M) is an explicit function, which is…

Probability · Mathematics 2010-01-18 M. Formentin , C. Kuelske

The Subgraph Isomorphism problem is of considerable importance in computer science. We examine the problem when the pattern graph H is of bounded treewidth, as occurs in a variety of applications. This problem has a well-known algorithm via…

Data Structures and Algorithms · Computer Science 2021-05-12 Karl Bringmann , Jasper Slusallek

This paper studies the problem of recovering the hidden vertex correspondence between two edge-correlated random graphs. We focus on the Gaussian model where the two graphs are complete graphs with correlated Gaussian weights and the…

Statistics Theory · Mathematics 2022-02-17 Yihong Wu , Jiaming Xu , Sophie H. Yu

This paper is concerned with the question of reconstructing a vector in a finite-dimensional real Hilbert space when only the magnitudes of the coefficients of the vector under a redundant linear map are known. We analyze various Lipschitz…

Functional Analysis · Mathematics 2013-08-23 Radu Balan , Yang Wang

Phylogenetic networks are directed acyclic graphs that depict the genomic evolution of related taxa. Reticulation nodes in such networks (nodes with more than one parent) represent reticulate evolutionary events, such as recombination,…

Populations and Evolution · Quantitative Biology 2024-11-21 Alexey Markin , Sriram Vijendran , Oliver Eulenstein

We investigate the complexity of finding a transformation from a given spanning tree in a graph to another given spanning tree in the same graph via a sequence of edge flips. The exchange property of the matroid bases immediately yields…

Data Structures and Algorithms · Computer Science 2022-01-13 Nicolas Bousquet , Takehiro Ito , Yusuke Kobayashi , Haruka Mizuta , Paul Ouvrard , Akira Suzuki , Kunihiro Wasa

We give an algorithm that takes as input an $n$-vertex graph $G$ and an integer $k$, runs in time $2^{O(k^2)} n^{O(1)}$, and outputs a tree decomposition of $G$ of width at most $k$, if such a decomposition exists. This resolves the…

Data Structures and Algorithms · Computer Science 2023-08-21 Tuukka Korhonen , Daniel Lokshtanov

In 1995, Brouwer proved that the toughness of a connected $k$-regular graph $G$ is at least $k/\lambda-2$, where $\lambda$ is the maximum absolute value of the non-trivial eigenvalues of $G$. Brouwer conjectured that one can improve this…

Combinatorics · Mathematics 2013-12-10 Sebastian M. Cioabă , Wiseley Wong

The strongest bounds on some forms of Lorentz and CPT violation come from astrophysical data, and placing such bounds may require understanding and modeling distant sources of radiation. However, it is also desirable to have bounds that do…

High Energy Physics - Phenomenology · Physics 2011-05-10 Brett Altschul

We study budget constrained network upgradeable problems. We are given an undirected edge weighted graph $G=(V,E)$ where the weight an edge $e \in E$ can be upgraded for a cost $c(e)$. Given a budget $B$ for improvement, the goal is to find…

Data Structures and Algorithms · Computer Science 2014-12-12 Debjyoti Saharoy , Sandeep Sen

This work considers the problem of learning the structure of multivariate linear tree models, which include a variety of directed tree graphical models with continuous, discrete, and mixed latent variables such as linear-Gaussian models,…

Machine Learning · Computer Science 2011-11-09 Animashree Anandkumar , Kamalika Chaudhuri , Daniel Hsu , Sham M. Kakade , Le Song , Tong Zhang

The choice of the kernel is critical to the success of many learning algorithms but it is typically left to the user. Instead, the training data can be used to learn the kernel by selecting it out of a given family, such as that of…

Machine Learning · Computer Science 2012-05-14 Corinna Cortes , Mehryar Mohri , Afshin Rostamizadeh