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A random growth lattice filling model of percolation with touch and stop growth rule is developed and studied numerically on a two dimensional square lattice. Nucleation centers are continuously added one at a time to the empty sites and…

Statistical Mechanics · Physics 2018-06-13 Bappaditya Roy , S. B. Santra

We study the approach towards equilibrium in a dynamic Ising model, the Q2R cellular automaton, with microscopic reversibility and conserved energy for an infinite one-dimensional system. Starting from a low-entropy state with positive…

Statistical Mechanics · Physics 2017-08-02 Kristian Lindgren , Eckehard Olbrich

We estimate density of defects frozen into a biological Turing pattern which was turned on at a finite rate. A self-locking of gene expression in individual cells, which makes the Turing transition discontinuous, stabilizes the pattern…

Biological Physics · Physics 2007-05-23 Jacek Dziarmaga

We develop a mesoscopic model to study the plastic behavior of an amorphous material under cyclic loading. The model is depinning-like and driven by a disordered thresholds dynamics which are coupled by long-range elastic interactions. We…

Soft Condensed Matter · Physics 2023-08-07 Dheeraj Kumar , Sylvain Patinet , Craig E. Maloney , Ido Regev , Damien Vandembroucq , Muhittin Mungan

We argue that the stochastic dynamics of interacting agents which replicate, mutate and die constitutes a non-equilibrium physical process akin to aging in complex materials. Specifically, our study uses extensive computer simulations of…

Populations and Evolution · Quantitative Biology 2014-08-19 Nikolaj Becker , Paolo Sibani

The impact of confinement on self-assembly of particles interacting with short-range attraction and long-range repulsion (SALR) potential is studied for thermodynamic states corresponding to local ordering of clusters or layers in the bulk.…

Soft Condensed Matter · Physics 2014-11-17 Jakub Pękalski , Alina Ciach , Noé G. Almarza

We study the growing time scales and length scales associated with dynamical slow down for a realistic glass former, using computer simulations. We perform finite size scaling to evaluate a length scale associated with dynamical…

Statistical Mechanics · Physics 2009-11-13 Smarajit Karmakar , Chandan Dasgupta , Srikanth Sastry

After a sudden quench from the disordered high-temperature $T_0\to\infty$ phase to a final temperature below the critical point $T_F \ll T_c$, the non-conserved order parameter dynamics of the two-dimensional ferromagnetic Ising model on a…

We present a statistical mechanical description of randomly packed spherical particles, where the average coordination number is treated as a macroscopic thermodynamic variable. The overall packing entropy is shown to have two…

Soft Condensed Matter · Physics 2022-02-02 Jack A. Logan , Alexei V. Tkachenko

This paper develops a general data-driven approach to stochastic elastoplastic modelling that leverages atomistic simulation data directly rather than by fitting parameters. The approach is developed in the context of metallic glasses,…

Statistical Mechanics · Physics 2024-10-02 Bin Xu , Zhao Wu , Jiayin Lu , Michael D. Shields , Chris H. Rycroft , Franz Bamer , Michael L. Falk

The parallel mutation-selection evolutionary dynamics, in which mutation and replication are independent events, is solved exactly in the case that the Malthusian fitnesses associated to the genomes are described by the Random Energy Model…

Biological Physics · Physics 2009-10-14 David B. Saakian , José F. Fontanari

The non-modal transient growth of perturbations in horizontal and inclined channel flows of two immiscible fluids is studied. 3D perturbations are examined in order to find the optimal perturbations that attain the maximum amplification of…

Fluid Dynamics · Physics 2018-10-31 Ilya Barmak , Alexander Gelfgat , Amos Ullmann , Neima Brauner

We study stability of a growth process generated by sequential adsorption of particles on a one-dimensional lattice torus, that is, the process formed by the numbers of adsorbed particles at lattice sites, called heights. Here the stability…

Probability · Mathematics 2009-12-16 Vadim Shcherbakov , Stanislav Volkov

We study two dimensional frustrated but non-disordered systems applying a replica approach to a stripe forming model with competing interactions. The phenomenology of the model is representative of several well known systems, like high-Tc…

Statistical Mechanics · Physics 2013-06-18 Ana C. Ribeiro Teixeira , Daniel A. Stariolo , Daniel G. Barci

We analyze scaling behaviors of simulated annealing carried out on various classical systems with topological order, obtained as appropriate limits of the toric code in two and three dimensions. We first consider the three-dimensional…

Statistical Mechanics · Physics 2018-02-08 Na Xu , Claudio Castelnovo , Roger G. Melko , Claudio Chamon , Anders W. Sandvik

We examine the focusing of kinetic energy and the amplification of various quantities during the snapping motion of the free end of a flexible structure. This brief but violent event appears to be a regularized finite-time singularity, with…

Classical Physics · Physics 2023-07-06 A. R. Dehadrai , J. A. Hanna

Flow networks are essential for both living organisms and enginneered systems. These networks often present complex dynamics controlled, at least in part, by their topology. Previous works have shown that topologically complex networks…

Soft Condensed Matter · Physics 2020-03-24 Miguel Ruiz-Garcia , Eleni Katifori

We connect the configurational entropy of a liquid to the geometrical properties of its local energy landscape, using a high-temperature expansion. It is proposed that correlations between local structures arises from their overlap and,…

Soft Condensed Matter · Physics 2016-08-24 Pierre Ronceray , Peter Harrowell

In this article, we introduce a framework to investigate the growth of nano-crystallites in a polymer matrix numerically. This framework combines the Flory theory of entropic elasticity with phase-field approaches commonly used to model…

Soft Condensed Matter · Physics 2022-01-26 Rabia Laghmach , Nicolas Candau , Laurent Chazeau , Thierry Biben

We perform molecular-dynamics simulations of a molecular system in supercooled states for different values of inertia parameters to provide evidence that the long-time dynamics depends only on the equilibrium structure. This observation is…

Soft Condensed Matter · Physics 2009-11-10 S. -H. Chong , F. Sciortino