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We present three algorithms for calculating rate constants and sampling transition paths for rare events in simulations with stochastic dynamics. The methods do not require a priori knowledge of the phase space density and are suitable for…

Soft Condensed Matter · Physics 2009-11-11 Rosalind J. Allen , Daan Frenkel , Pieter Rein ten Wolde

Generating long-term trajectories of dissipative chaotic systems autoregressively is a highly challenging task. The inherent positive Lyapunov exponents amplify prediction errors over time. Many chaotic systems possess a crucial property -…

Chaotic Dynamics · Physics 2025-05-27 Yi He , Yiming Yang , Xiaoyuan Cheng , Hai Wang , Xiao Xue , Boli Chen , Yukun Hu

We study the Lyapunov instability of a two-dimensional fluid composed of rigid diatomic molecules, with two interaction sites each, and interacting with a WCA site-site potential. We compute full spectra of Lyapunov exponents for such a…

chem-ph · Physics 2009-10-28 I. Borzsák , H. A. Posch , A. Baranyai

Chaotic functions are characterized by sensitivity to initial conditions, transitivity, and regularity. Providing new functions with such properties is a real challenge. This work shows that one can associate with any Boolean network a…

Discrete Mathematics · Computer Science 2011-12-08 J. M. Bahi , J. -F. Couchot , C. Guyeux , A. Richard

Understanding the dynamics of complex molecular processes is often linked to the study of infrequent transitions between long-lived stable states. The standard approach to the sampling of such rare events is to generate an ensemble of…

Computational Physics · Physics 2023-05-22 Sebastian Falkner , Alessandro Coretti , Salvatore Romano , Phillip Geissler , Christoph Dellago

In this article, on the example of the known low-order dynamical models, namely Lorenz, Rossler and Vallis systems, the difficulties of reliable numerical analysis of chaotic dynamical systems are discussed. For the Lorenz system, the…

Chaotic Dynamics · Physics 2019-05-22 N. V. Kuznetsov , T. N. Mokaev

A signal processing method designed for the detection of linear (coherent) behaviors among random fluctuations is presented. It is dedicated to the study of data recorded from nonlinear physical systems. More precisely the method is suited…

Chaotic Dynamics · Physics 2013-10-03 F. Briolle , B. Ricaud , X. Leoncini

We consider a general class of maps of the interval having Lyapunov subexponential instability $|\delta x_{t}|\sim|\delta x_{0}|\exp[\Lambda_{t}(x_{0})\zeta(t)]$, where $\zeta(t)$ grows sublinearly as $t\rightarrow\infty$. We outline here a…

Chaotic Dynamics · Physics 2014-10-22 Pierre Nazé , Roberto Venegeroles

Paths are important structural elements in complex networks because they are finite (unlike walks), related to effective node coverage (minimum spanning trees), and can be understood as being dual to star connectivity. This article…

Physics and Society · Physics 2007-12-05 Luciano da Fontoura Costa

Lyapunov exponents are well-known characteristic numbers that describe growth rates of perturbations applied to a trajectory of a dynamical system in different state space directions. Covariant (or characteristic) Lyapunov vectors indicate…

Chaotic Dynamics · Physics 2012-03-28 Pavel V. Kuptsov , Ulrich Parlitz

We study the concentration phenomenon for discrete-time random dynamical systems with an unbounded state space. We develop a heuristic approach towards obtaining exponential concentration inequalities for dynamical systems using an entirely…

Machine Learning · Statistics 2022-12-08 Muhammad Abdullah Naeem , Miroslav Pajic

The striking fractal geometry of strange attractors underscores the generative nature of chaos: like probability distributions, chaotic systems can be repeatedly measured to produce arbitrarily-detailed information about the underlying…

Machine Learning · Computer Science 2023-01-31 William Gilpin

Using large-scale parallel numerical simulations we explore spatiotemporal chaos in Rayleigh-B\'enard convection in a cylindrical domain with experimentally relevant boundary conditions. We use the variation of the spectrum of Lyapunov…

Chaotic Dynamics · Physics 2015-06-03 Alireza Karimi , Mark R. Paul

Recently, several complex network approaches to time series analysis have been developed and applied to study a wide range of model systems as well as real-world data, e.g., geophysical or financial time series. Among these techniques,…

Chaotic Dynamics · Physics 2012-03-23 Reik V. Donner , Jobst Heitzig , Jonathan F. Donges , Yong Zou , Norbert Marwan , Jürgen Kurths

We show that long chaotic transients dominate the dynamics of randomly diluted networks of pulse-coupled oscillators. This contrasts with the rapid convergence towards limit cycle attractors found in networks of globally coupled units. The…

Disordered Systems and Neural Networks · Physics 2009-11-10 Alexander Zumdieck , Marc Timme , Theo Geisel , Fred Wolf

The dependence of the Lyapunov exponent on the closeness parameter, $\epsilon$, in tangent bifurcation systems is investigated. We study and illustrate two averaging procedures for defining Lyapunov exponents in such systems. First, we…

chao-dyn · Physics 2015-06-24 James Hanssen , Walter Wilcox

Chaos is an inherently dynamical phenomenon traditionally studied for trajectories that are either permanently erratic or transiently influenced by permanently erratic ones lying on a set of measure zero. The latter gives rise to the final…

Chaotic Dynamics · Physics 2013-11-12 Adilson E. Motter , Marton Gruiz , Gyorgy Karolyi , Tamas Tel

We develop an extension of the fast method of angles for hyperbolicity verification in chaotic systems with an arbitrary number of time-delay feedback loops. The adopted method is based on the theory of covariant Lyapunov vectors and…

Chaotic Dynamics · Physics 2017-09-13 Pavel V. Kuptsov , Sergey P. Kuznetsov

We discuss the possibility of applying some standard statistical methods (the least square method, the maximum likelihood method, the method of statistical moments for estimation of parameters) to deterministically chaotic low-dimensional…

Data Analysis, Statistics and Probability · Physics 2009-11-10 V. F. Pisarenko , D. Sornette

A dynamical systems approach to turbulence envisions the flow as a trajectory through a high-dimensional state space transiently visiting the neighbourhoods of unstable simple invariant solutions (E. Hopf, Commun. Appl. Maths 1, 303, 1948).…

Fluid Dynamics · Physics 2023-11-15 Jacob Page , Peter Norgaard , Michael P. Brenner , Rich R. Kerswell