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Since they became observable, neuron morphologies have been informally compared with biological trees but they are studied by distinct communities, neuroscientists, and ecologists. The apparent structural similarity suggests there may be…

Neurons and Cognition · Quantitative Biology 2023-07-06 Roozbeh Farhoodi , Phil Wilkes , Anirudh M. Natarajan , Samantha Ing-Esteves , Julie L. Lefebvre , Mathias Disney , Konrad P. Kording

This paper gives exact formulas for the regularity of edge ideals of edge-weighted integrally closed trees. In addition, we provide some linear upper bounds on the regularity of powers of such ideals.

Commutative Algebra · Mathematics 2024-03-07 Jiaxin Li , Guangjun Zhu , Shiya Duan

Tree-width is an invaluable tool for computational problems on graphs. But often one would like to compute on other kinds of objects (e.g. decorated graphs or even algebraic structures) where there is no known tree-width analogue. Here we…

Combinatorics · Mathematics 2022-06-22 Benjamin Merlin Bumpus , Zoltan A. Kocsis

We establish an inequality which involves a non-negative function defined on the vertices of a finite $m$-ary regular rooted tree. The inequality may be thought of as relating an interaction energy defined on the free vertices of the tree…

Classical Analysis and ODEs · Mathematics 2014-10-24 Kenneth J Falconer

We give exact formulas for the transmission (i.e. the sum of all distances between vertices) of perfect trees and rooted powers of (connected finite) graphs.

Combinatorics · Mathematics 2019-07-02 Nicolás Cianci

A hierarchical structure describing the inter-relationships of species has long been a fundamental concept in systematic biology, from Linnean classification through to the more recent quest for a 'Tree of Life.' In this paper we use an…

Populations and Evolution · Quantitative Biology 2009-08-21 Andreas Dress , Vincent Moulton , Mike Steel , Taoyang Wu

We give an algorithm to enumerate the results on trees of monadic second-order (MSO) queries represented by nondeterministic tree automata. After linear time preprocessing (in the input tree), we can enumerate answers with linear delay (in…

Databases · Computer Science 2019-08-28 Antoine Amarilli , Pierre Bourhis , Stefan Mengel , Matthias Niewerth

We give relations between the joint distributions of multiple hook lengths and of frequencies and part sizes in partitions, extending prior work in this area. These results are discovered by investigating truncations of the…

Combinatorics · Mathematics 2019-01-01 Emily E. Anible , William J. Keith

This paper presents a new approach for trees-based regression, such as simple regression tree, random forest and gradient boosting, in settings involving correlated data. We show the problems that arise when implementing standard…

Methodology · Statistics 2021-08-09 Assaf Rabinowicz , Saharon Rosset

Whereas for strings, higher-order empirical entropy is the standard entropy measure, several different notions of empirical entropy for trees have been proposed in the past, notably label entropy, degree entropy, conditional versions of the…

Information Theory · Computer Science 2020-06-03 Danny Hucke , Markus Lohrey , Louisa Seelbach Benkner

To most mathematicians and computer scientists the word ``tree'' conjures up, in addition to the usual image, the image of a connected graph with no circuits. In the last few years various types of trees have been the subject of much…

Group Theory · Mathematics 2016-09-06 John W. Morgan

Each natural number can be associated with some tree graph. Namely, a natural number $n$ can be factorized as $$ n = p_1^{\alpha_1}\ldots p_k^{\alpha_k},$$ where $p_i$ are distinct prime numbers. Since $\alpha_i$ are naturals, they can be…

Number Theory · Mathematics 2022-10-13 Vitalii V. Iudelevich

Connected acyclic graphs (trees) are data objects that hierarchically organize categories. Collections of trees arise in a diverse variety of fields, including evolutionary biology, public health, machine learning, social sciences and…

Methodology · Statistics 2025-12-01 Maria Alejandra Valdez Cabrera , Amy D Willis , Armeen Taeb

A suffix tree is a data structure used mainly for pattern matching. It is known that the space complexity of simple suffix trees is quadratic in the length of the string. By a slight modification of the simple suffix trees one gets the…

Combinatorics · Mathematics 2016-11-15 Bálint Vásárhelyi

Tree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, R\'acz, and Rashtchian used combinatorial…

Data Structures and Algorithms · Computer Science 2021-02-03 Tatiana Brailovskaya , Miklós Z. Rácz

In this work a composition-decomposition technique is presented that correlates tree eigenvectors with certain eigenvectors of an associated so-called skeleton forest. In particular, the matching properties of a skeleton determine the…

Combinatorics · Mathematics 2018-08-21 Torsten Sander , Jürgen W. Sander

We obtain an improved lower bound for the regularity of the binomial edge ideals of trees. We prove an upper bound for the regularity of the binomial edge ideals of certain subclass of block-graphs. As a consequence we obtain sharp upper…

Commutative Algebra · Mathematics 2018-04-30 A. V. Jayanthan , N. Narayanan , B. V. Raghavendra Rao

We survey the definition and some elementary properties of real trees. There are no new results, as far as we know. One purpose is to give a number of different definitions and show the equivalence between them. We discuss also, for…

Combinatorics · Mathematics 2023-03-15 Svante Janson

The definition of $k^{th}$-order empirical entropy of strings is extended to node labelled binary trees. A suitable binary encoding of tree straight-line programs (that have been used for grammar-based tree compression before) is shown to…

Data Structures and Algorithms · Computer Science 2020-05-21 Danny Hucke , Markus Lohrey , Louisa Seelbach Benkner

In this article, we propose tree edit distance with variables, which is an extension of the tree edit distance to handle trees with variables and has a potential application to measuring the similarity between mathematical formulas,…

Data Structures and Algorithms · Computer Science 2021-05-12 Tatsuya Akutsu , Tomoya Mori , Naotoshi Nakamura , Satoshi Kozawa , Yuhei Ueno , Thomas N. Sato