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The approach for the description of the DNA conformational transformations on the mesoscopic scales in the frame of the double helix is presented. Due to consideration of the joint motions of DNA structural elements along the conformational…

Biomolecules · Quantitative Biology 2009-09-29 S. N. Volkov

Colloidal gels constitute an important class of materials found in many contexts and with a wide range of applications. Yet as matter far from equilibrium, gels exhibit a variety of time-dependent behaviours, which can be perplexing, such…

Soft Condensed Matter · Physics 2021-09-22 C. Patrick Royall , Malcolm A. Faers , Sian L. Fussell , James E. Hallett

We present a deformation-dependent propulsion phenomenon for soft particles such as cells in microchannels. It is based on a broken time reversal symmetry generated by a fast forward and slow backward motion of a fluid which does not…

Soft Condensed Matter · Physics 2022-02-22 Winfried Schmidt , Andre Förtsch , Matthias Laumann , Walter Zimmermann

Spherical microparticles dispersed in nematic liquid crystals have been extensively investigated in the past years. Here, we report experimental studies on the elastic deformation, colloidal interaction and self-assembly of hematite…

Soft Condensed Matter · Physics 2020-07-15 Devika V S , Ravi Kumar Pujala , Surajit Dhara

Fluids with competing short range attraction and long range repulsive interactions between the particles can exhibit a variety of microphase separated structures. We develop a lattice-gas (generalised Ising) model and analyse the phase…

Soft Condensed Matter · Physics 2016-01-20 Blesson Chacko , Christopher Chalmers , Andrew J. Archer

We perform the linear stability analysis for a new model for poromechanical processes with inertia (formulated in mixed form using the solid deformation, fluid pressure, and total pressure) interacting with diffusing and reacting solutes…

We consider sedimented at a solid wall particles that are immersed in water containing small additives of photosensitive ionic surfactants. It is shown that illumination with an appropriate wavelength, a beam intensity profile, shape and…

We have developed a poly(dimethylsiloxane) (PDMS) microfluidic chip to study the directional drying of a colloidal dispersion confined in a channel. Our measurements on a dispersion of silica nanoparticles once again revealed the…

Soft Condensed Matter · Physics 2024-01-11 Hrishikesh Pingulkar , Sonia Maréchal , Jean-Baptiste Salmon

Periodic assemblies of nanoparticles are central to surface patterning, with applications in biosensing, energy conversion, and nanofabrication. Evaporation of colloidal droplets on substrates provides a simple yet effective route to…

Soft Condensed Matter · Physics 2026-01-29 Suman Bhattacharjee , Sanjoy Khawas , Sunita Srivastava

The existing theoretical analyses of solidification dynamics lack the insights of historical relevance and transport processes in the whole system. Through the phase-field model, this paper investigates the evolution in the whole domain…

Materials Science · Physics 2023-09-06 Fengyi Yu

As recently reported [Turiv T. et al., Science, 2013, Vol. 342, 1351], fluctuations in the orientation of the liquid crystal (LC) director can transfer momentum from the LC to a colloid, such that the diffusion of the colloid becomes…

Soft Condensed Matter · Physics 2015-06-15 T. Turiv , A. Brodin , V. Nazarenko

New insights into phase separation in colloidal suspensions are provided via a new dynamical theory based on the Polydisperse Lattice-Gas model. The model gives a simplified description of polydisperse colloids, incorporating a hard-core…

Soft Condensed Matter · Physics 2017-08-03 Pablo de Castro , Peter Sollich

Experiments on a thin layer of cohesive wet granular matter under vertical vibrations reveal kink separated domains that collide with the container at different phases. Due to the strong cohesion arising from the formation of liquid bridges…

Soft Condensed Matter · Physics 2015-07-13 Lorenz Butzhammer , Simeon Völkel , Ingo Rehberg , Kai Huang

We propose a new method for electrophoretic separation of DNA in which adsorbed polymers are driven over a disordered two-dimensional substrate which contains attractive sites for the polymers. Using simulations of a model for long polymer…

Soft Condensed Matter · Physics 2008-03-31 C. J. Olson Reichhardt , C. Reichhardt

Based on a non-equilibrium mechanism for spatial pattern formation we study how position information can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of cells in a developing…

Molecular Networks · Quantitative Biology 2009-08-26 Thimo Rohlf , Stefan Bornholdt

Active colloidal particles that are propelled by a self-diffusiophoretic mechanism are often described by Langevin equations that are either postulated on physical grounds or derived using the methods of fluctuating hydrodynamics. While…

Statistical Mechanics · Physics 2020-10-28 Bryan Robertson , Jeremy Schofield , Pierre Gaspard , Raymond Kapral

A model accounting for finite spatial dimensions of the deposit patterns in the evaporating sessile drops of colloidal solution on a plane substrate is proposed. The model is based on the assumption that the solute particles occupy finite…

Soft Condensed Matter · Physics 2009-11-10 Yuri O. Popov

Hypothesis: A broad range of phenomena, such as emulsification and emulsion stability, foam formation or liquid evaporation, are closely related to the dynamics of adsorbing colloidal particles. Elucidation of the mechanisms implied is key…

Soft Condensed Matter · Physics 2022-02-22 J. Martín-Roca , M. Jiménez , F. Ortega , C. Calero , Ch. Valeriani , R. G. Rubio , F. Martínez-Pedrero

Diffusion models generate structure by progressively transforming noise into data, yet the mechanisms underlying this transition remain poorly understood. In this work, we show that pattern formation in trained diffusion models can be…

Machine Learning · Computer Science 2026-04-29 Luca Ambrogioni

We derive an upscaled model describing the aggregation and deposition of colloidal particles within a porous medium allowing for the possibility of local clogging of the pores. At the level of the pore scale, we extend an existing model for…

Analysis of PDEs · Mathematics 2019-11-19 Adrian Muntean , Christos V. Nikolopoulos