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We study the following substring suffix selection problem: given a substring of a string T of length n, compute its k-th lexicographically smallest suffix. This a natural generalization of the well-known question of computing the maximal…

Data Structures and Algorithms · Computer Science 2013-09-24 Maxim Babenko , Paweł Gawrychowski , Tomasz Kociumaka , Tatiana Starikovskaya

Given a string $S$ of length $n$, the classic string indexing problem is to preprocess $S$ into a compact data structure that supports efficient subsequent pattern queries. In the \emph{deterministic} variant the goal is to solve the string…

Data Structures and Algorithms · Computer Science 2016-12-07 Philip Bille , Inge Li Gørtz , Frederik Rye Skjoldjensen

For a text given in advance, the substring minimal suffix queries ask to determine the lexicographically minimal non-empty suffix of a substring specified by the location of its occurrence in the text. We develop a data structure answering…

Data Structures and Algorithms · Computer Science 2016-02-01 Tomasz Kociumaka

The problem of Text Indexing is a fundamental algorithmic problem in which one wishes to preprocess a text in order to quickly locate pattern queries within the text. In the ever evolving world of dynamic and on-line data, there is also a…

Data Structures and Algorithms · Computer Science 2012-08-21 Tsvi Kopelowitz

We consider the $Parameterized$ $Pattern$ $Matching$ problem, where a pattern $P$ matches some location in a text $\mathsf{T}$ iff there is a one-to-one correspondence between the alphabet symbols of the pattern to those of the text. More…

Data Structures and Algorithms · Computer Science 2016-04-07 Arnab Ganguly , Rahul Shah , Sharma V. Thankachan

Given a string $S$ of $n$ integers in $[0,\sigma)$, a range minimum query RMQ$(i, j)$ asks for the index of the smallest integer in $S[i \dots j]$. It is well known that the problem can be solved with a succinct data structure of size $2n +…

Data Structures and Algorithms · Computer Science 2019-05-30 Paweł Gawrychowski , Seungbum Jo , Shay Mozes , Oren Weimann

We show how, given a straight-line program with $g$ rules for a binary string $B$ of length $n$, in $O(g^{2 / 3} n^{4 / 3})$ time we can build a linear-space index such that, given $m$ and $c$, in O(1) time we can determine whether there is…

Data Structures and Algorithms · Computer Science 2012-11-16 Travis Gagie

Let $S$ be a string of length $n$ over an alphabet $\Sigma$ and let $Q$ be a subset of $\Sigma$ of size $q \geq 2$. The 'co-occurrence problem' is to construct a compact data structure that supports the following query: given an integer $w$…

Data Structures and Algorithms · Computer Science 2022-11-11 Philip Bille , Inge Li Gørtz , Tord Stordalen

The rank and select operations over a string of length n from an alphabet of size $\sigma$ have been used widely in the design of succinct data structures. In many applications, the string itself need be maintained dynamically, allowing…

Data Structures and Algorithms · Computer Science 2010-06-25 Meng He , J. Ian Munro

For the first time we provide a succinct pattern matching index for arbitrary graphs that can be built in polynomial time, which requires less space and answers queries more efficiently than the one in [SODA 2021]. We show that, given an…

Data Structures and Algorithms · Computer Science 2021-11-09 Nicola Cotumaccio

The problem of constructing optimal factoring automata arises in the context of unification factoring for the efficient execution of logic programs. Given an ordered set of $n$ strings of length $m$, the problem is to construct a trie-like…

Data Structures and Algorithms · Computer Science 2024-04-04 Thomas Erlebach , Kleitos Papadopoulos

Let $\mathcal{D}$ be a collection of $D$ documents, which are strings over an alphabet of size $\sigma$, of total length $n$. We describe a data structure that uses linear space and and reports $k$ most relevant documents that contain a…

Data Structures and Algorithms · Computer Science 2013-08-02 Gonzalo Navarro , Yakov Nekrich

We revisit the classic border tree data structure [Gu, Farach, Beigel, SODA 1994] that answers the following prefix-suffix queries on a string $T$ of length $n$ over an integer alphabet $\Sigma=[0,\sigma)$: for any $i,j \in [0,n)$ return…

Data Structures and Algorithms · Computer Science 2024-11-07 Solon P. Pissis

Document listing on string collections is the task of finding all documents where a pattern appears. It is regarded as the most fundamental document retrieval problem, and is useful in various applications. Many of the fastest-growing…

Data Structures and Algorithms · Computer Science 2019-02-21 Dustin Cobas , Gonzalo Navarro

We show that the compressed suffix array and the compressed suffix tree of a string $T$ can be built in $O(n)$ deterministic time using $O(n\log\sigma)$ bits of space, where $n$ is the string length and $\sigma$ is the alphabet size.…

Data Structures and Algorithms · Computer Science 2016-11-15 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

We show that the compressed suffix array and the compressed suffix tree for a string of length $n$ over an integer alphabet of size $\sigma\leq n$ can both be built in $O(n)$ (randomized) time using only $O(n\log\sigma)$ bits of working…

Data Structures and Algorithms · Computer Science 2016-05-24 Djamal Belazzougui

The problem of finding a center string that is `close' to every given string arises and has many applications in computational biology and coding theory. This problem has two versions: the Closest String problem and the Closest Substring…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Ming Li , Bin Ma , Lusheng Wang

We describe a substring search problem that arises in group presentation simplification processes. We suggest a two-level searching model: skip and match levels. We give two timestamp algorithms which skip searching parts of the text where…

Group Theory · Mathematics 2009-09-25 George Havas , Jin Xian Lian

Strings form a fundamental data type in computer systems. String searching has been extensively studied since the inception of computer science. Increasingly many applications have to deal with imprecise strings or strings with fuzzy…

Databases · Computer Science 2015-09-30 Sharma V. Thankachan , Manish Patil , Rahul Shah , Sudip Biswas

We propose novel algorithms for sequence prediction based on ideas from stringology. These algorithms are time and space efficient and satisfy mistake bounds related to particular stringological complexity measures of the sequence. In this…

Formal Languages and Automata Theory · Computer Science 2026-03-31 Vanessa Kosoy