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The equilibrium structure of a Dinucleosome is studied using an elastic model that takes into account the force and torque balance conditions. Using the proper boundary conditions, it is found that the conformational energy of the problem…

Biological Physics · Physics 2016-07-12 Hashem Fatemi , Fatemeh Khodabandeh , Farshid Mohammad-Rafiee

Entangled matter displays unusual and attractive properties and mechanisms: tensile strength, capabilities for assembly and disassembly, damage tolerance. While some of the attributes and mechanisms share some traits with traditional…

Soft Condensed Matter · Physics 2025-04-09 Saeed Pezeshki , Youhan Sohn , Vivien Fouquet , Francois Barthelat

The structure of a vortex in the inner crust of a pulsar is calculated microscopically in the Wigner-Seitz cell approximation, simulating the conditions of the inner crust of a cold, non-accreting neutron star, in which a lattice of nuclei…

Nuclear Theory · Physics 2024-10-28 P. Klausner , F. Barranco , P. M. Pizzochero , X. Roca-Maza , E. Vigezzi

The buckling instabilities of core-shell systems, comprising an interior elastic sphere, attached to an exterior shell, have been proposed to underlie myriad biological morphologies. To fully discuss such systems, however, it is important…

Soft Condensed Matter · Physics 2023-07-12 Yingzhen Tian , Megan McCarthy , Megan King , S. G. J. Mochrie

The elastic deformation of a soft solid induced by capillary forces crucially relies on the excess stress inside the solid-liquid interface. While for a liquid-liquid interface this "surface stress" is strictly identical to the "surface…

Soft Condensed Matter · Physics 2015-06-17 Joost H. Weijs , Jacco H. Snoeijer , Bruno Andreotti

The dynamical properties and mechanical functions of amorphous materials are governed by their microscopic structures, particularly the elasticity of the interaction networks, which is generally complicated by structural heterogeneity. This…

Statistical Mechanics · Physics 2018-04-11 Le Yan

Cells and other soft particles are often forced to flow in confined geometries in both laboratory and natural environments, where the elastic deformation induces an additional drag and pressure drop across the particle. In contrast with…

Fluid Dynamics · Physics 2025-07-09 Charles Paul Moore , Hiba Belkadi , Brouna Safi , Gabriel Amselem , Charles N. Baroud

The extensive application of surfactants motivates comprehensive and predictive theoretical studies that improve our understanding of the behaviour of these complex systems. In this study, an expression for the elastic free-energy density…

Soft Condensed Matter · Physics 2015-02-10 Meisam Asgari

Thermal properties of graphene display peculiar characteristics associated to the two-dimensional nature of this crystalline membrane. These properties can be changed and tuned in the presence of applied stresses, both tensile and…

Materials Science · Physics 2018-06-07 Carlos P. Herrero , Rafael Ramirez

Membrane tubulation is a ubiquitous process that occurs both at the plasma membrane and on the membranes of intracellular organelles. These tubulation events are known to be mediated by forces applied on the membrane either due to motor…

Soft Condensed Matter · Physics 2020-12-03 Arijit Mahapatra , Can Uysalel , Padmini Rangamani

We discuss shape profiles emerging in inhomogeneous growth of squeezed tissues. Two approaches are used simultaneously: i) conformal embedding of two-dimensional domain with hyperbolic metrics into the plane, and ii) a pure energetic…

Soft Condensed Matter · Physics 2015-11-25 Sergei Nechaev , Kirill Polovnikov

We propose an elasticity theory for one and two dimensional arrays of globular proteins for which the free energy is affected by relative position and relative rotation between neighboring molecules. The kinematics of such assemblies is…

Biological Physics · Physics 2009-11-11 Wayne M. Falk , Richard D. James

Biologically inspired pressure actuated cellular structures can alter their shape through pressure variations. Previous work introduced a computational framework for pressure actuated cellular structures which was limited to two cell rows…

Quantitative Methods · Quantitative Biology 2017-04-10 Markus Pagitz , Remco I. Leine

Invaginations are partial enclosures formed by surfaces. Typically formed by biological membranes; they abound in nature. In this paper, we consider fundamentally different structures: elastically stabilized invaginations. Focusing on…

Soft Condensed Matter · Physics 2022-06-14 Xiaoyu Zheng , Tianyi Guo , Peter Palffy-Muhoray

A constitutive relation between stress and strain relative to a reference state is the basic assumption of elasticity theory. However, in living matter, force generation is governed by motor molecule activity, which does not depend on…

Soft Condensed Matter · Physics 2026-03-17 Nikolas H. Claussen , Fridtjof Brauns , Boris I. Shraiman

We show that the interplay between excluded volume effects, hydrophobicity, and hydrogen bonding of a tube-like representation of a polypeptide chain gives rise to free energy landscapes that exhibit a small number of metastable minima…

During the early-stages of embryo development, morphogenesis--- the emergence of shape and form in living organisms--- is almost exclusively associated with monolayers of tightly bound epithelial cells. To understand how such tissues change…

Soft Condensed Matter · Physics 2019-08-28 Richard G. Morris , Madan Rao

Monodisperse spherical colloidal particles confined within emulsion droplets can crystallize into icosahedral clusters. Experimentally it was observed that a few large colloidal particles added as defects preferentially migrate to the…

Soft Condensed Matter · Physics 2026-04-29 Praveen K. Bommineni , Junwei Wang , Nicolas Vogel , Michael Engel

This review describes the analytical calculation of lateral pressure profile in lipid membrane with finite curvature. The derivation is based on the previously developed microscopic model of flexible strings [1,2]. According to this theory…

Soft Condensed Matter · Physics 2016-07-08 Anna A. Drozdova

Interfaces between stratified epithelia and their supporting stromas commonly exhibit irregular shapes. Undulations are particularly pronounced in dysplastic tissues and typically evolve into long, finger-like protrusions in carcinomas. In…

Biological Physics · Physics 2013-06-25 Thomas Risler , Markus Basan