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Community detection and link prediction are both of great significance in network analysis, which provide very valuable insights into topological structures of the network from different perspectives. In this paper, we propose a novel…

Social and Information Networks · Computer Science 2017-07-11 Hui-Min Cheng , Yi-Zi Ning , Zhao Yin , Chao Yan , Xin Liu , Zhong-Yuan Zhang

A large body of research on link prediction problem is devoted to finding missing links in single-layer (simplex) networks. The proposed link prediction methods compute a similarity measure between unconnected node pairs based on the…

The temporal dynamics of a complex system such as a social network or a communication network can be studied by understanding the patterns of link appearance and disappearance over time. A critical task along this understanding is to…

Social and Information Networks · Computer Science 2018-04-17 Mahmudur Rahman , Tanay Kumar Saha , Mohammad Al Hasan , Kevin S. Xu , Chandan K. Reddy

Revealing how a biological network is organized to realize its function is one of the main topics in systems biology. The functional backbone network, defined as the primary structure of the biological network, is of great importance in…

Adaptation and Self-Organizing Systems · Physics 2016-12-31 Zhiwei He , Meng Zhan , Jianxiong Wang , Chenggui Yao

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

Modeling biological networks serves as both a major goal and an effective tool of systems biology in studying mechanisms that orchestrate the activities of gene products in cells. Biological networks are context specific and dynamic in…

Molecular Networks · Quantitative Biology 2014-02-20 Ye Tian , Bai Zhang , Eric P. Hoffman , Robert Clarke , Zhen Zhang , Ie-Ming Shih , Jianhua Xuan , David M. Herrington , Yue Wang

Inspired by practical importance of social networks, economic networks, biological networks and so on, studies on large and complex networks have attracted a surge of attentions in the recent years. Link prediction is a fundamental issue to…

Social and Information Networks · Computer Science 2017-04-05 Ratha Pech , Dong Hao , Liming Pan , Hong Cheng , Tao Zhou

The sheer amounts of biological data that are generated in recent years have driven the development of network analysis tools to facilitate the interpretation and representation of these data. A fundamental challenge in this domain is the…

Quantitative Methods · Quantitative Biology 2013-07-31 Arnon Mazza , Irit Gat-Viks , Hesso Farhan , Roded Sharan

Outliers arise in networks due to different reasons such as fraudulent behavior of malicious users or default in measurement instruments and can significantly impair network analyses. In addition, real-life networks are likely to be…

Machine Learning · Statistics 2020-12-02 Solenne Gaucher , Olga Klopp , Geneviève Robin

An active research line within the broader field of network science is the one concerning link prediction. Close in scope to network reconstruction, link prediction targets specific connections with the aim of uncovering the missing ones,…

Physics and Society · Physics 2026-02-02 Francesca Santucci , Giulio Cimini , Tiziano Squartini

This paper deals with gene networks whose dynamics is assumed to be generated by a continuous-time, linear, time invariant, finite dimensional system (LTI) at steady state. In particular, we deal with the problem of network reconstruction…

Quantitative Methods · Quantitative Biology 2007-05-23 Lorenzo Farina , Ilaria Mogno

Reconstructing the states of the nodes of a dynamical network is a problem of fundamental importance in the study of neuronal and genetic networks. An underlying related problem is that of observability, i.e., identifying the conditions…

Pattern Formation and Solitons · Physics 2017-03-31 Afroza Shirin , Dionicio F. Rios , Francesco Sorrentino

This paper deals with identifiability of undirected dynamical networks with single-integrator node dynamics. We assume that the graph structure of such networks is known, and aim to find graph-theoretic conditions under which the state…

Optimization and Control · Mathematics 2018-07-24 Henk J. van Waarde , Pietro Tesi , M. Kanat Camlibel

Graph self-supervised learning (SSL) has been vastly employed to learn representations from unlabeled graphs. Existing methods can be roughly divided into predictive learning and contrastive learning, where the latter one attracts more…

Machine Learning · Computer Science 2022-11-29 Jiashun Cheng , Man Li , Jia Li , Fugee Tsung

Networks in nature possess a remarkable amount of structure. Via a series of data-driven discoveries, the cutting edge of network science has recently progressed from positing that the random graphs of mathematical graph theory might…

Physics and Society · Physics 2008-07-14 Natali Gulbahce , Sune Lehmann

Understanding the origins of complexity is a fundamental challenge with implications for biological and technological systems. Network theory emerges as a powerful tool to model complex systems. Networks are an intuitive framework to…

Disordered Systems and Neural Networks · Physics 2024-10-22 Blai Vidiella , Salva Duran-Nebreda , Sergi Valverde

Many real-world problems can be formalized as predicting links in a partially observed network. Examples include Facebook friendship suggestions, consumer-product recommendations, and the identification of hidden interactions between actors…

Machine Learning · Computer Science 2020-02-05 Xi Chen , Bo Kang , Jefrey Lijffijt , Tijl De Bie

We propose Generative Well-intentioned Networks (GWINs), a novel framework for increasing the accuracy of certainty-based, closed-world classifiers. A conditional generative network recovers the distribution of observations that the…

Machine Learning · Computer Science 2019-10-29 Justin Cosentino , Jun Zhu

Community structure appears to be an intrinsic property of many complex real-world networks. However, recent work shows that real-world networks reveal even more sophisticated modules than classical cohesive (link-density) communities. In…

Physics and Society · Physics 2012-02-07 Lovro Šubelj , Marko Bajec

Novel method of reconstructing dynamical networks from empirically measured time series is proposed. By examining the variable--derivative correlation of network node pairs, we derive a simple equation that directly yields the adjacency…

Data Analysis, Statistics and Probability · Physics 2012-10-09 Zoran Levnajić