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Transfer entropy has been used to quantify the directed flow of information between source and target variables in many complex systems. While transfer entropy was originally formulated in discrete time, in this paper we provide a framework…

Information Theory · Computer Science 2017-04-05 Richard E. Spinney , Mikhail Prokopenko , Joseph T. Lizier

We present a novel approach to the study of epidemics on networks as thermodynamic phenomena, considering the thermodynamic efficiency of contagions, considered as distributed computational processes. Modelling SIS dynamics on a contact…

Populations and Evolution · Quantitative Biology 2018-10-24 Nathan Harding , Ramil Nigmatullin , Mikhail Prokopenko

According to the theory of efficient coding, sensory systems are adapted to represent natural scenes with high fidelity and at minimal metabolic cost. Testing this hypothesis for sensory structures performing non-linear computations on high…

Neurons and Cognition · Quantitative Biology 2018-04-13 Ulisse Ferrari , Christophe Gardella , Olivier Marre , Thierry Mora

We present a new interpretation for encoding information of the period of input signals into spike-trains in individual sensory neuronal systems. The spike-train could be described as the waveform sample of the input signal which locks…

Neurons and Cognition · Quantitative Biology 2007-05-23 Sheng-Jun Wang , Xin-Jian Xu , Ying-Hai Wang

Spiking neural networks (SNNs) could play a key role in unsupervised machine learning applications, by virtue of strengths related to learning from the fine temporal structure of event-based signals. However, some spike-timing-related…

Neural and Evolutionary Computing · Computer Science 2020-09-10 Timoleon Moraitis , Abu Sebastian , Irem Boybat , Manuel Le Gallo , Tomas Tuma , Evangelos Eleftheriou

Characterising the representation of sensory stimuli in the brain is a fundamental scientific endeavor, which can illuminate principles of information coding. Most characterizations reduce the dimensionality of neural data by converting…

Neurons and Cognition · Quantitative Biology 2024-01-23 James B Isbister

Thought to be responsible for memory, synaptic plasticity has been widely studied in the past few decades. One example of plasticity models is the popular Spike Timing Dependent Plasticity (STDP). The huge litterature of STDP models are…

Probability · Mathematics 2018-03-02 Pascal Helson

Understanding information processing in the brain requires the ability to determine the functional connectivity between the different regions of the brain. We present a method using transfer entropy to extract this flow of information…

Neurons and Cognition · Quantitative Biology 2019-03-06 Benjamin Walker , Katherine Newhall

Maximum entropy methods provide a principled path connecting measurements of neural activity directly to statistical physics models, and this approach has been successful for populations of $N\sim 100$ neurons. As $N$ increases in new…

Biological Physics · Physics 2023-10-18 Christopher W. Lynn , Qiwei Yu , Rich Pang , William Bialek , Stephanie E. Palmer

Consider a compound Poisson process with jump measure $\nu$ supported by finitely many positive integers. We propose a method for estimating $\nu$ from a single, equidistantly sampled trajectory and develop associated statistical…

Statistics Theory · Mathematics 2009-09-29 Werner Ehm , Benjamin Staude , Stefan Rotter

The aim of this paper is to investigate various information-theoretic measures, including entropy, mutual information, and some systematic measures that based on mutual information, for a class of structured spiking neuronal network. In…

Neurons and Cognition · Quantitative Biology 2019-12-04 Wenjie Li , Yao Li

The relative timing of action potentials in neurons recorded from local cortical networks often shows a non-trivial dependence, which is then quantified by cross-correlation functions. Theoretical models emphasize that such spike train…

Neurons and Cognition · Quantitative Biology 2017-06-28 Taskin Deniz , Stefan Rotter

Using results from neurobiology on perceptual decision making and value-based decision making, the problem of decision making between lotteries is reformulated in an abstract space where uncertain prospects are mapped to corresponding…

Neurons and Cognition · Quantitative Biology 2020-01-03 Adnan Rebei

The ultimate purpose of the statistical analysis of ordinal patterns is to characterize the distribution of the features they induce. In particular, knowing the joint distribution of the pair Entropy-Statistical Complexity for a large class…

A good understanding of how neurons use electrical pulses (i.e, spikes) to encode the signal information remains elusive. Analyzing spike sequences generated by individual neurons and by two coupled neurons (using the stochastic…

Neurons and Cognition · Quantitative Biology 2019-10-23 Maria Masoliver , Cristina Masoller

We study the stochastic dynamics of strongly-coupled excitable elements on a tree network. The peripheral nodes receive independent random inputs which may induce large spiking events propagating through the branches of the tree and leading…

Biological Physics · Physics 2017-07-14 Justus Kromer , Ali Khaledi-Nasab , Lutz Schimansky-Geier , Alexander B. Neiman

The rate coding response of a single peripheral sensory neuron in the asymptotic, near-equilibrium limit can be derived using information theory, asymptotic Bayesian statistics and a theory of complex systems. Almost no biological knowledge…

Neurons and Cognition · Quantitative Biology 2020-12-14 Willy Wong

Repeated occurrences of serial firing sequences of a group of neurons with fixed time delays between neurons are observed in many experiments involving simultaneous recordings from multiple neurons. Such temporal patterns are potentially…

Neurons and Cognition · Quantitative Biology 2008-09-01 C. O. Diekman , P. S. Sastry , K. P. Unnikrishnan

In spiking neural networks, the information is conveyed by the spike times, that depend on the intrinsic dynamics of each neuron, the input they receive and on the connections between neurons. In this article we study the Markovian nature…

Applications · Statistics 2012-11-07 Jonathan Touboul , Olivier Faugeras

Entropy is a measure of heterogeneity widely used in applied sciences, often when data are collected over space. Recently, a number of approaches has been proposed to include spatial information in entropy. The aim of entropy is to…

Statistics Theory · Mathematics 2019-11-12 Linda Altieri , Daniela Cocchi , Giulia Roli