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Motivated by applications in social and biological network analysis, we introduce a new form of agnostic clustering termed~\emph{motif correlation clustering}, which aims to minimize the cost of clustering errors associated with both edges…

Data Structures and Algorithms · Computer Science 2018-11-07 Pan Li , Gregory J. Puleo , Olgica Milenkovic

Brain network analysis based on functional Magnetic Resonance Imaging (fMRI) is pivotal for diagnosing brain disorders. Existing approaches typically rely on predefined functional sub-networks to construct sub-network associations. However,…

Machine Learning · Computer Science 2026-03-11 Jingfeng Tang , Peng Cao , Guangqi Wen , Jinzhu Yang , Xiaoli Liu , Osmar R. Zaiane

Graph clustering (or community detection) has long drawn enormous attention from the research on web mining and information networks. Recent literature on this topic has reached a consensus that node contents and link structures should be…

Social and Information Networks · Computer Science 2017-12-25 Carl Yang , Mengxiong Liu , Zongyi Wang , Liyuan Liu , Jiawei Han

With advances in neural recording techniques, neuroscientists are now able to record the spiking activity of many hundreds of neurons simultaneously, and new statistical methods are needed to understand the structure of this large-scale…

Neurons and Cognition · Quantitative Biology 2023-03-03 Ganchao Wei , Ian H. Stevenson , Xiaojing Wang

Mining human-brain networks to discover patterns that can be used to discriminate between healthy individuals and patients affected by some neurological disorder, is a fundamental task in neuroscience. Learning simple and interpretable…

Social and Information Networks · Computer Science 2020-06-11 Tommaso Lanciano , Francesco Bonchi , Aristides Gionis

Brain development during adolescence is marked by substantial changes in brain structure and function, leading to a stable network topology in adulthood. However, most prior work has examined the data through the lens of brain areas…

Quantitative Methods · Quantitative Biology 2016-12-26 Shi Gu , Muzhi Yang , John D. Medaglia , Ruben C. Gur , Raquel E. Gur , Theodore D. Satterthwaite , Danielle S. Bassett

Existing research on making sense of deep neural networks often focuses on neuron-level interpretation, which may not adequately capture the bigger picture of how concepts are collectively encoded by multiple neurons. We present…

Computer Vision and Pattern Recognition · Computer Science 2021-08-31 Haekyu Park , Nilaksh Das , Rahul Duggal , Austin P. Wright , Omar Shaikh , Fred Hohman , Duen Horng Chau

We conduct a systematic robustness analysis of the unsupervised machine learning module within the hybrid framework \texttt{USmorph}. This module automatically discovers morphological structures from large-scale galaxy images, forming the…

Astrophysics of Galaxies · Physics 2026-05-21 Guanwen Fang , Xiaolei Yin , Yirui Zheng , Zesen Lin , Shiwei Zhu , Jie Song , Chichun Zhou , Xu Kong

The neuronal networks in the mammals cortex are characterized by the coexistence of hierarchy, modularity, short and long range interactions, spatial correlations, and topographical connections. Particularly interesting, the latter type of…

Disordered Systems and Neural Networks · Physics 2009-11-10 Luciano da F. Costa , Luis Diambra

This paper proposes an unsupervised learning technique by using Multi-layer Mirroring Neural Network and Forgy's clustering algorithm. Multi-layer Mirroring Neural Network is a neural network that can be trained with generalized data inputs…

Machine Learning · Computer Science 2008-12-15 Dasika Ratna Deepthi , G. R. Aditya Krishna , K. Eswaran

Graph clustering, which aims to divide nodes in the graph into several distinct clusters, is a fundamental yet challenging task. Benefiting from the powerful representation capability of deep learning, deep graph clustering methods have…

Machine Learning · Computer Science 2023-09-13 Yue Liu , Jun Xia , Sihang Zhou , Xihong Yang , Ke Liang , Chenchen Fan , Yan Zhuang , Stan Z. Li , Xinwang Liu , Kunlun He

Classifying the morphologies of galaxies is an important step in understanding their physical properties and evolutionary histories. The advent of large-scale surveys has hastened the need to develop techniques for automated morphological…

Astrophysics of Galaxies · Physics 2021-12-28 Mitchell K. Cavanagh , Kenji Bekki , Brent A. Groves

Within scientific and real life problems, classification is a typical case of extremely complex tasks in data-driven scenarios, especially if approached with traditional techniques. Machine Learning supervised and unsupervised paradigms,…

Instrumentation and Methods for Astrophysics · Physics 2018-07-13 Giuseppe Angora , Massimo Brescia , Stefano Cavuoti , Giuseppe Riccio , Maurizio Paolillo , Thomas H. Puzia

Unsupervised time series clustering is a challenging problem with diverse industrial applications such as anomaly detection, bio-wearables, etc. These applications typically involve small, low-power devices on the edge that collect and…

Machine Learning · Computer Science 2021-06-01 Shreyas Chaudhari , Harideep Nair , José M. F. Moura , John Paul Shen

Cell migration is crucial to many physiological and pathological processes. During migration, a cell adapts its morphology, including the overall morphology and nucleus morphology, in response to various cues in complex microenvironments,…

Biological Physics · Physics 2023-08-28 Yanping Liu , Yang Jiao , Qihui Fan , Xinwei Li , Zhichao Liu , Jun Hu , Jianwei Shuai , Liyu Liu , Zhangyong Li

We introduce a novel statistical significance-based approach for clustering hierarchical data using semi-parametric linear mixed-effects models designed for responses with laws in the exponential family (e.g., Poisson and Bernoulli). Within…

Methodology · Statistics 2025-02-04 Alessandra Ragni , Chiara Masci , Francesca Ieva , Anna Maria Paganoni

Clustering data objects into homogeneous groups is one of the most important tasks in data mining. Spectral clustering is arguably one of the most important algorithms for clustering, as it is appealing for its theoretical soundness and is…

Machine Learning · Statistics 2024-03-12 Dylan Soemitro , Jeova Farias Sales Rocha Neto

A novel method to obtain hierarchical and overlapping clusters from network data -i.e., a set of nodes endowed with pairwise dissimilarities- is presented. The introduced method is hierarchical in the sense that it outputs a nested…

Social and Information Networks · Computer Science 2017-12-13 Fernando Gama , Santiago Segarra , Alejandro Ribeiro

Following the work of arXiv:2101.09512, we are interested in clustering a given multi-variate series in an unsupervised manner. We would like to segment and cluster the series such that the resulting blocks present in each cluster are…

Protein representation learning is a challenging task that aims to capture the structure and function of proteins from their amino acid sequences. Previous methods largely ignored the fact that not all amino acids are equally important for…

Machine Learning · Computer Science 2024-04-02 Ruijie Quan , Wenguan Wang , Fan Ma , Hehe Fan , Yi Yang
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