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This paper studies the haplotype assembly problem from an information theoretic perspective. A haplotype is a sequence of nucleotide bases on a chromosome, often conveniently represented by a binary string, that differ from the bases in the…

Information Theory · Computer Science 2014-05-13 Hongbo Si , Haris Vikalo , Sriram Vishwanath

Very brief summary of the most recent developments in an area of QED corrections to the parity nonconservation in atoms is presented. Main conclusion - experimental results of Wood et al do not contradict the standard model

High Energy Physics - Phenomenology · Physics 2007-05-23 M. Yu. Kuchiev , V. V. Flambaum

In previous work by Coates, Galkin, and the authors, the notion of mutation between lattice polytopes was introduced. Such a mutation gives rise to a deformation between the corresponding toric varieties. In this paper we study one-step…

Algebraic Geometry · Mathematics 2022-10-28 Mohammad Akhtar , Alexander Kasprzyk

The appropriate choice of the genotype-phenotype mapping in combination with the mutation operator is important for a successful evolutionary search process. We suggest a measure to quantify the quality of this combination by addressing the…

adap-org · Physics 2007-05-23 Bernhard Sendhoff , Martin Kreutz , Werner von Seelen

Computing haplotypes from sequencing data, i.e. haplotype assembly, is an important component of molecular and population genetics problems, including interpreting the effects of genetic variation on complex traits and reconstructing…

Genomics · Quantitative Biology 2026-03-12 Marjan Hosseini , Ella Veiner , Thomas Bergendahl , Tala Yasenpoor , Zane Smith , Margaret Staton , Derek Aguiar

We show in a simple and general way that matter effects do not contribute to the averaged value of the probabilities of transition of solar $\nu_e$'s into other states in the case of maximal mixing of any number of massive neutrinos. We…

High Energy Physics - Phenomenology · Physics 2009-10-28 S. M. Bilenky , C. Giunti , C. W. Kim

In this paper, we study the phenomenology of right-handed neutrino isosinglets. We consider the general situation where the neutrino masses are not necessarily given by $m_D^2/M$, where $m_D$ and $M$ are the Dirac and Majorana mass terms…

High Energy Physics - Phenomenology · Physics 2009-10-28 Lay Nam Chang , Daniel Ng , John N. Ng

We examine constraints on a model with pure right-handed third generation charged couplings. The parameters of the right-handed mixing matrix and the right-handed coupling strength are constrained from semi-leptonic B decays, the mass…

High Energy Physics - Phenomenology · Physics 2009-10-31 Adam Lewandowski

Polytypism of incommensurately modulated structures was hitherto unobserved. Here, we found the phenomenon in simple halogen systems of bromine and iodine upon molecular dissociation in the solids under pressure. Single-crystal synchrotron…

We derive a conditional variational principle of the saturated set for systems with the non-uniform structure. Our result applies to a broad class of systems including beta-shifts, S-gap shifts and their factors.

Dynamical Systems · Mathematics 2019-03-20 Cao Zhao , Ercai Chen

In this paper we focus on providing sufficient conditions for some transform orders for which the quantile densities ratio is non-monotone and, therefore, the convex transform order does not hold. These results are interesting for comparing…

Probability · Mathematics 2026-01-27 A. Arriaza , F. Belzunce , C. Martínez-Riquelme

comment on Phys. Rev. Lett. 103, 042302 (2009)

High Energy Physics - Phenomenology · Physics 2009-08-04 Thomas A. Trainor

We present precise and reproducible mean pressure measurements at the bottom of a cylindrical granular column. If a constant overload is added, the pressure is linear in overload and nonmonotonic in the column height. The results are {\em…

Condensed Matter · Physics 2009-10-31 L. Vanel , Ph. Claudin , J. -Ph. Bouchaud , M. E. Cates , E. Clément , J. P. Wittmer

Whole exome sequencing was performed on HLA-matched stem cell donors and transplant recipients to measure sequence variation contributing to minor histocompatibility antigen differences between the two. A large number of nonsynonymous…

This paper has been superseded by hep-th/0307227.

High Energy Physics - Theory · Physics 2015-06-26 Subir Ghosh

The aim of this note is to point out some observations concerning modified power entropy of $\Z$- and $\N$-actions. First, we provide an elementary example showing that this quantity is sensitive to transient dynamics, and therefore does…

Dynamical Systems · Mathematics 2015-06-25 M. Gröger , T. Jäger

Evolution on neutral networks of genotypes has been found in models to concentrate on genotypes with high mutational robustness, to a degree determined by the topology of the network. Here analysis is generalized beyond neutral networks to…

Populations and Evolution · Quantitative Biology 2015-09-01 Lee Altenberg

A search for leptoquarks at HERA was performed in H1 using 1994 $e^+ p$ data corresponding to an integrated luminosity of about $3 \pb^{-1}$. Single leptoquarks were searched for in direct positron-quark fusion processes taking into account…

High Energy Physics - Experiment · Physics 2008-11-26 H1 Collaboration , S. Aid et al

Gravity with incorporation of additional dimensions and noncommutative geometry.

High Energy Physics - Theory · Physics 2008-12-04 Martin Kober

The excess in electron recoil events reported recently by the XENON1T experiment may be interpreted as evidence for a sizable transition magnetic moment $\mu_{\nu_e\nu_\mu}$ of Majorana neutrinos. We show the consistency of this scenario…

High Energy Physics - Phenomenology · Physics 2022-01-11 K. S. Babu , Sudip Jana , Manfred Lindner
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