Related papers: A bracket polynomial for graphs, IV. Undirected Eu…
Entanglement is a complexity measure of digraphs that origins in fixed-point logics. Its combinatorial purpose is to measure the nested depth of cycles in digraphs. We address the problem of characterizing the structure of graphs of…
M. Niebrzydowski and J. H. Przytycki defined a Kauffman bracket magma and constructed the invariant P of framed links in 3-space. The invariant is closely related to the Kauffman bracket polynomial. The normalized bracket polynomial is…
Given any diagram of a link, we define on the cube of Kauffman's states a "2-complex" whose homology is an invariant of the associated framed links, and such that the graded Euler characteristic reproduces the unnormalized Kauffman bracket.…
The observed output of an interferometer is the result of interference among the parts of the input light beam traveling along each possible optical path. In complex systems, writing down all these possible optical paths and computing their…
To any directed graph we associate an algebra with edges of the graph as generators and with relations defined by all pairs of directed paths with the same origin and terminus. Such algebras are related to factorizations of polynomials over…
We construct and study a class of algebras associated to generalized layered graphs, i.e. directed graphs with a ranking function on their vertices. Each finite directed acyclic graph admits countably many structures of a generalized…
We introduce and study so-called self-indexed graphs. These are (oriented) finite graphs endowed with a map from the set of edges to the set of vertices. Such graphs naturally arise from classical knot and link diagrams. In fact, the graphs…
Chain graphs combine directed and undirected graphs and their underlying mathematics combines properties of the two. This paper gives a simplified definition of chain graphs based on a hierarchical combination of Bayesian (directed) and…
A common choice for the evolution of the knotted graphs in loop quantum gravity is to use the Pachner moves, adapted to graphs from their dual triangulations. Here, we show that the natural way to consistently use these moves is on framed…
The present paper is an introduction to a combinatorial theory arising as a natural generalisation of classical and virtual knot theory. There is a way to encode links by a class of `realisable' graphs. When passing to generic graphs with…
We model proteins with intramolecular bonds, such as disulfide bridges, using the concept of bonded knots -- closed loops in three-dimensional space equipped with additional bonds that connect different segments of the knot. We extend the…
An extension of the Artin Braid Group with new operators that generate double and triple intersections is considered. The extended Alexander theorem, relating intersecting closed braids and intersecting knots is proved for double and triple…
To a singular knot K with n double points, one can associate a chord diagram with n chords. A chord diagram can also be understood as a 4-regular graph endowed with an oriented Euler circuit. L. Traldi introduced a polynomial invariant for…
The bipartition polynomial of a graph is a generalization of many other graph polynomials, including the domination, Ising, matching, independence, cut, and Euler polynomial. We show in this paper that it is also a powerful tool for proving…
The W-polynomial is applied in two ways to questions involving the Kauffman bracket of some families of links. First we find a geometric property of a link diagram, which is less than or equal to the twist number, that bounds the Mahler…
In a recent paper Jones introduced a correspondence between elements of the Thompson group $F$ and certain graphs/links. It follows from his work that several polynomial invariants of links, such as the Kauffman bracket, can be…
We describe Markov interval maps via branching systems and develop the theory of relative branching systems, characterizing when the associated representations of relative graph C*-algebras are faithful. When the Markov interval maps $f$…
In the theory of line graphs of undirected graphs there exists an important theorem linking the incidence matrix of the root graph to the adjacency matrix of its line graph. For directed or mixed graphs, however, the exists no analogous…
We extend the Wirtinger number of links, an invariant originally defined by Blair, Kjuchukova, Velazquez, and Villanueva in terms of extending initial colorings of some strands of a diagram to the entire diagram, to spatial graphs. We prove…
We give combinatorial proofs of some enumeration formulas involving labelled threshold, quasi-threshold, loop-threshold and quasi-loop-threshold graphs. In each case we count by number of vertices and number of components. For threshold…