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This paper brings together three distinct theories with the goal of quantifying shape textures with complex morphologies. Distance fields are central objects in shape representation, while topological data analysis uses algebraic topology…

Algebraic Topology · Mathematics 2023-07-04 Anna Song , Ka Man Yim , Anthea Monod

A topological approach to stratification learning is developed for point cloud data drawn from a stratified space. Given such data, our objective is to infer which points belong to the same strata. First we define a multi-scale notion of a…

Geometric Topology · Mathematics 2010-08-24 Paul Bendich , Sayan Mukherjee , Bei Wang

Hyperuniformity, the suppression of density fluctuations at large length scales, is observed across a wide variety of domains, from cosmology to condensed matter and biological systems. Although the standard definition of hyperuniformity…

Statistical Mechanics · Physics 2024-05-07 Marco Salvalaglio , Dominic J. Skinner , Jörn Dunkel , Axel Voigt

We study circle valued maps and consider the persistence of the homology of their fibers. The outcome is a finite collection of computable invariants which answer the basic questions on persistence and in addition encode the topology of the…

Algebraic Topology · Mathematics 2015-03-19 Dan Burghelea , Tamal K. Dey

Recently, persistent homology has had tremendous success in biomolecular data analysis. It works by examining the topological relationship or connectivity of a group of atoms in a molecule at a variety of scales, then rendering a family of…

Biomolecules · Quantitative Biology 2019-03-27 David Bramer , Guo-Wei Wei

Graphs are commonly used to encode relationships among entities, yet their abstractness makes them difficult to analyze. Node-link diagrams are popular for drawing graphs, and force-directed layouts provide a flexible method for node…

Graphics · Computer Science 2020-01-14 Ashley Suh , Mustafa Hajij , Bei Wang , Carlos Scheidegger , Paul Rosen

Persistent homology computes topological invariants from point cloud data. Recent work has focused on developing statistical methods for data analysis in this framework. We show that, in certain models, parametric inference can be performed…

Quantitative Methods · Quantitative Biology 2014-06-19 Kevin Emmett , Daniel Rosenbloom , Pablo Camara , Raul Rabadan

In standard persistent homology, a persistent cycle born and dying with a persistence interval (bar) associates the bar with a concrete topological representative, which provides means to effectively navigate back from the barcode to the…

Computational Geometry · Computer Science 2025-03-03 Tamal K. Dey , Tao Hou , Anirudh Pulavarthy

Persistent homology is an important methodology in topological data analysis which adapts theory from algebraic topology to data settings. Computing persistent homology produces persistence diagrams, which have been successfully used in…

Machine Learning · Statistics 2026-01-13 Yueqi Cao , Anthea Monod

Features such as photon rings, jets, or hot. spots can leave particular topological signatures in a black hole image. As such, topological data analysis can be used to characterize images resulting from high resolution observations…

High Energy Astrophysical Phenomena · Physics 2022-10-11 Pierre Christian , Chi-kwan Chan , Anthony Hsu , Feryal Ozel , Dimitrios Psaltis , Iniyan Natarajan

A tower is a sequence of simplicial complexes connected by simplicial maps. We show how to compute a filtration, a sequence of nested simplicial complexes, with the same persistent barcode as the tower. Our approach is based on the coning…

Algebraic Topology · Mathematics 2017-10-13 Michael Kerber , Hannah Schreiber

We present a novel method to explicitly incorporate topological prior knowledge into deep learning based segmentation, which is, to our knowledge, the first work to do so. Our method uses the concept of persistent homology, a tool from…

Computer Vision and Pattern Recognition · Computer Science 2019-01-30 James R. Clough , Ilkay Oksuz , Nicholas Byrne , Julia A. Schnabel , Andrew P. King

Network centrality measures play a crucial role in understanding graph structures, assessing the importance of nodes, paths, or cycles based on directed or reciprocal interactions encoded by vertices and edges. Estrada and Ross extended…

Computational Geometry · Computer Science 2024-04-26 John Rick D. Manzanares , Paul Samuel P. Ignacio

This article studies the robust version of persistent homology based on trimming methodology to capture the geometric feature through support of the data in presence of outliers. Precisely speaking, the proposed methodology works when the…

Methodology · Statistics 2026-01-01 Tuhin Subhra Mahato , Subhra Sankar Dhar

In topological data analysis, we want to discern topological and geometric structure of data, and to understand whether or not certain features of data are significant as opposed to simply random noise. While progress has been made on…

Computational Geometry · Computer Science 2020-01-10 So Mang Han , Taylor Okonek , Nikesh Yadav , Xiaojun Zheng

This paper introduces a method to detect each geometrically significant loop that is a geodesic circle (an isometric embedding of $S^1$) and a bottleneck loop (meaning that each of its perturbations increases the length) in a geodesic space…

Algebraic Topology · Mathematics 2024-11-13 Žiga Virk

We study the persistent homology of random \v{C}ech complexes. Generalizing a method of Penrose for studying random geometric graphs, we first describe an appropriate theoretical framework in which we can state and address our main…

Algebraic Topology · Mathematics 2018-01-26 Ulrich Bauer , Florian Pausinger

In this paper, we introduce a persistent (co)homology theory for Cayley digraph grading. We give the algebraic structures of Cayley-persistence object. Specifically, we consider the module structure of persistent (co)homology and show the…

Algebraic Topology · Mathematics 2022-08-18 Wanying Bi , Jingyan Li , Jian Liu , Jie Wu

In this paper we introduce a statistic, the persistent homology transform (PHT), to model surfaces in $\mathbb{R}^3$ and shapes in $\mathbb{R}^2$. This statistic is a collection of persistence diagrams - multiscale topological summaries…

Statistics Theory · Mathematics 2014-07-16 Katharine Turner , Sayan Mukherjee , Doug M Boyer

An Important tool in the field topological data analysis is known as persistent Homology (PH) which is used to encode abstract representation of the homology of data at different resolutions in the form of persistence diagram (PD). In this…

Image and Video Processing · Electrical Eng. & Systems 2022-07-13 Aras Asaad , Dashti Ali , Taban Majeed , Rasber Rashid