Related papers: Microscopic formulation of the Zimm-Bragg model fo…
Based on the Zimm-Bragg model we study cooperative helix-coil transition driven by a finite-speed change of temperature. There is an asymmetry between the coil-to-helix and helix-to-coil transition: the latter is displayed already for…
The basic models of helix-coil transitions in biomolecules are introduced. These include phenomenological, zipper (Bragg-Zimm) models of polypeptides, loop-entropy (Poland-Scheraga) and Hamiltonian (Peyrard-Bishop) models of homogeneous DNA…
The theory of transition between $\alpha$-helix, $\beta$-sheet and random coil conformation of a protein is discussed through a simple model, that includes both short and long-range interactions. Besides the bonding parameter and helical…
We revisit the one-dimensional ferromagnetic Ising spin-chain with a finite number of spins and periodic boundaries and derive analytically and verify numerically its various stationary and dynamical properties at different temperatures. In…
A self-consistent field theory was developed in the grand-canonical ensemble formulation to study transitions in a helix-coil multiblock globule. Helical and coil parts are treated as stiff rods and self-avoiding walks of variable lengths…
We study the thermodynamic properties of spin systems with bond-disorder on small-world hypergraphs, obtained by superimposing a one-dimensional Ising chain onto a random Bethe graph with p-spin interactions. Using transfer-matrix…
We discuss the origin of an enigmatic low-temperature behavior of one-dimensional decorated spin systems which was coined the pseudo-transition. Tracing out the decorated parts results in the standard Ising-chain model with…
We study the thermodynamic properties of spin systems on small-world hypergraphs, obtained by superimposing sparse Poisson random graphs with p-spin interactions onto a one-dimensional Ising chain with nearest-neighbor interactions. We use…
In this work, we investigate thermodynamic properties of the one-dimensional (1D) spin-crossover molecular chain being a subject of a constant external pressure. Effective compressible degenerate Ising model is used as a theoretical…
A quasi 2-dimensional recursive lattice formed by planar elements have been designed to investigate the surface thermodynamics of Ising spin glass system with the aim to study the metastability of supercooled liquids and the ideal glass…
We propose a spin model with a new kind of ferromagnetic interaction, which may be called {\it ferromagnetic coupling with threshold}. In this model the contribute of a given spin to the total energy has only two possible values and depends…
An inhomogeneous random recursive lattice was constructed from the multi-branched Husimi square lattice. The number of repeating units connected on one vertex was randomly set to be 2 or 3 with a quenched ratio $P_2$ or $P_3$ with…
In this paper we summarize some results of our theoretical investigations of helix-coil transition both in single-strand (polypeptides) and two-strand (polynucleotides) macromolecules. The Hamiltonian does not contain any parameter designed…
A characteristic feature of the non--equilibrium dynamics of real spin glasses at low temperatures are strong aging effects. These phenomena can be manipulated by changing the external parameters in various ways: a thermo-cycling experiment…
The similarity in the thermodynamic properties of two completely different theoretical models for the helix-coil transition is examined critically. The first model is an all-atomic representation for a poly-alanine chain, while the second…
Helix-coil transition in polypeptides is an example of a spin model with a preferred spin direction, in the sense that a theoretical formulation of this problem requires to assign a preferred value of spin to the helical conformation in…
After the discovery of the phenomena of light-induced excited spin state trapping (LIESST), the functional properties of metal complexes have been studied intensively. Among them, cooperative phenomena involving low spin-high spin…
This review summarizes the results of a series of recent papers, where a microscopic model underlying the physics of elementary particles has been proposed. The 'tetron model' relies on the existence of an internal isospin space, in which…
We present a theoretical model of spin transitions in stacks of molecular layers. Our model captures the already established physics of these systems (thermal hysteretic transitions and crossovers) and suggests a way towards in situ control…
A coherent Ising machine (CIM) is known to deliver the low-energy states of the Ising model. Here, we investigate how well the CIM simulates the thermodynamic properties of a two-dimensional square-lattice Ising model. Assuming that the…