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The efficient and controlled assembly of complex structures from macromolecular building blocks is a critical open question in both biological systems and nanoscience. Using molecular dynamics simulations we study the self-assembly of…

Soft Condensed Matter · Physics 2014-06-10 Shengfeng Cheng , Mark J. Stevens

The number of distinguishable inherent structures of a liquid is the key component to understanding the thermodynamics of glass formers. In the case of hard potential systems such as hard discs, spheres and ellipsoids, an inherent structure…

Statistical Mechanics · Physics 2015-05-13 S. S. Ashwin , Richard K Bowles

An iterated function system $\Phi$ consisting of contractive similarity mappings has a unique attractor $F \subseteq \mathbb{R}^d$ which is invariant under the action of the system, as was shown by Hutchinson [Hut]. This paper shows how the…

Metric Geometry · Mathematics 2010-07-30 Erin P. J. Pearse

Given a triangulation of a closed topological cube, we show that (under some technical condition) there is an essentially unique tiling of a rectangular parallelepiped by cubes, indexed by the vertices of the triangulation. Moreover, i -…

Geometric Topology · Mathematics 2012-08-23 Sa'ar Hersonsky

Since its introduction by Erik Winfree in 1998, the abstract Tile Assembly Model (aTAM) has inspired a wealth of research. As an abstract model for tile based self-assembly, it has proven to be remarkably powerful and expressive in terms of…

Mathematical Software · Computer Science 2015-03-18 Matthew J. Patitz

We study the minimal complexity of tilings of a plane with a given tile set. We note that every tile set admits either no tiling or some tiling with O(n) Kolmogorov complexity of its n-by-n squares. We construct tile sets for which this…

Computational Complexity · Computer Science 2018-12-03 Bruno Durand , Leonid A. Levin , Alexander Shen

A simple, yet unifying method is provided for the construction of tilings by tiles obtained from the attractor of an iterated function system (IFS). Many examples appearing in the literature in ad hoc ways, as well as new examples, can be…

Metric Geometry · Mathematics 2013-10-24 Michael Barnsley , Andrew Vince

Symmetric polynomial quadrature rules for triangles are commonly used to efficiently integrate two-dimensional domains in finite-element-type problems. While the development of such rules focuses on the maximum degree a given number of…

Numerical Analysis · Mathematics 2025-12-19 Brian A. Freno , Neil R. Matula , Joseph E. Bishop

If a (cusped) surface S admits an ideal triangulation T with no shears, we show an efficient algorithm to give S as a quotient of hypebolic plane by a subgroup of PSL(2, Z). The algorithm runs in time O(n log n), where n is the number of…

Geometric Topology · Mathematics 2007-05-23 Igor Rivin

Patterned self-assembly tile set synthesis (PATS) aims at finding a minimum tile set to uniquely self-assemble a given rectangular color pattern. For $k \ge 1$, $k$-PATS is a variant of PATS that restricts input patterns to those with at…

Computational Complexity · Computer Science 2014-04-14 Aleck C. Johnsen , Ming-Yang Kao , Shinnosuke Seki

Consider a self-similar space X. A typical situation is that X looks like several copies of itself glued to several copies of another space Y, and Y looks like several copies of itself glued to several copies of X, or the same kind of thing…

Dynamical Systems · Mathematics 2007-05-23 Tom Leinster

Controlling the topology of structures self-assembled from a set of heterogeneous building blocks is highly desirable for many applications, but is poorly understood theoretically. Here we show that the thermodynamic theory of self-assembly…

Soft Condensed Matter · Physics 2021-03-04 Andrei A. Klishin , Michael P. Brenner

We prove that by successively combining subassemblies, we can achieve sublinear construction times for "staged" assembly of micro-scale objects from a large number of tiny particles, for vast classes of shapes; this is a significant advance…

Computational Geometry · Computer Science 2018-07-05 Arne Schmidt , Sheryl Manzoor , Li Huang , Aaron T. Becker , Sándor P. Fekete

We present the stellar resolution, a "flexible" tile system based on Robinson's first-order resolution. After establishing formal definitions and basic properties of the stellar resolution, we show its Turing-completeness and to illustrate…

Logic in Computer Science · Computer Science 2022-07-19 Boris Eng , Thomas Seiller

We introduce series-triangular graph embeddings and show how to partition point sets with them. This result is then used to improve the upper bound on the number of Steiner points needed to obtain compatible triangulations of point sets.…

Computational Geometry · Computer Science 2007-05-23 Jeff Danciger , Satyan L. Devadoss , Don Sheehy

Let $P$ and $Q$ be simple polygons with $n$ vertices each. We wish to compute triangulations of $P$ and $Q$ that are combinatorially equivalent, if they exist. We consider two versions of the problem: if a triangulation of $P$ is given, we…

Computational Geometry · Computer Science 2026-03-03 Peyman Afshani , Boris Aronov , Kevin Buchin , Maike Buchin , Otfried Cheong , Katharina Klost , Carolin Rehs , Günter Rote

Self-assembly of granular particles is of great interest in both applied and basic research. It is commonly observed that when randomly packed into a container, granular particles form disordered structures like glass. As the particles are…

Soft Condensed Matter · Physics 2025-01-20 Reza Amirifar , Kejun Dong , Aibing Yu

Most existing 3D assembly methods treat the problem as pure pose estimation, rearranging observed parts via rigid transformations. In contrast, human assembly naturally couples structural reasoning with holistic shape inference. Inspired by…

Computer Vision and Pattern Recognition · Computer Science 2026-02-27 Zeyu Jiang , Sihang Li , Siqi Tan , Chenyang Xu , Juexiao Zhang , Julia Galway-Witham , Xue Wang , Scott A. Williams , Radu Iovita , Chen Feng , Jing Zhang

We consider digit systems $(A,\mathcal{D})$, where $ A \in \mathbb{Q}^{n\times n}$ is an expanding matrix and the digit set $\mathcal{D}$ is a suitable subset of $\mathbb{Q}^n$. To such a system, we associate a self-affine set $\mathcal{F}…

Number Theory · Mathematics 2024-07-09 Lucía Rossi , Wolfgang Steiner , Jörg M. Thuswaldner

We investigate motion planning algorithms for the assembly of shapes in the \emph{tilt model} in which unit-square tiles move in a grid world under the influence of uniform external forces and self-assemble according to certain rules. We…

Robotics · Computer Science 2023-07-07 Patrick Blumenberg , Arne Schmidt , Aaron T. Becker