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Related papers: Triangular Self-Assembly

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This paper answers a long-standing open question in tile-assembly theory, namely that it is possible to strictly assemble discrete self-similar fractals (DSSFs) in the abstract Tile-Assembly Model (aTAM). We prove this in 2 separate ways,…

Computational Geometry · Computer Science 2024-10-11 Florent Becker , Daniel Hader , Matthew J. Patitz

In this paper we show that passive self-assembly in the context of the tile self-assembly model is capable of performing fuel efficient, universal computation. The tile self-assembly model is a premiere model of self-assembly in which…

Data Structures and Algorithms · Computer Science 2012-08-09 Robert Schweller , Michael Sherman

An N-tiling of triangle ABC by triangle T is a way of writing ABC as a union of N triangles congruent to T, overlapping only at their boundaries. The triangle T is the "tile". The tile may or may not be similar to ABC. We wish to understand…

Metric Geometry · Mathematics 2024-05-29 Michael Beeson

Winfree (1998) showed that discrete Sierpinski triangles can self-assemble in the Tile Assembly Model. A striking molecular realization of this self-assembly, using DNA tiles a few nanometers long and verifying the results by atomic-force…

Discrete Mathematics · Computer Science 2009-03-11 James I. Lathrop , Jack H. Lutz , Scott M. Summers

Interaction between dipolar forces, such as permanent magnets, generally leads to the formation of one-dimensional chains and rings. We investigated whether it was possible to let dipoles self-assemble into three-dimensional structures by…

Applied Physics · Physics 2020-05-12 Leon Abelmann , Tijmen Hageman , Per Löthman , Massimo Mastrangeli , Miko Elwenspoek

We present algorithmic results for the parallel assembly of many micro-scale objects in two and three dimensions from tiny particles, which has been proposed in the context of programmable matter and self-assembly for building high-yield…

Data Structures and Algorithms · Computer Science 2017-09-20 Aaron T. Becker , Sándor P. Fekete , Phillip Keldenich , Dominik Krupke , Christian Rieck , Christian Scheffer , Arne Schmidt

If particles interact according to isotropic pair potentials that favor multiple length scales, in principle a large variety of different complex structures can be achieved by self-assembly. We present, motivate, and discuss a conjecture…

Soft Condensed Matter · Physics 2018-11-07 Erdal C. Oğuz , Aleksandar Mijailović , Michael Schmiedeberg

Winfree's abstract Tile Assembly Model (aTAM) is a model of molecular self-assembly of DNA complexes known as tiles, which float freely in solution and attach one at a time to a growing "seed" assembly based on specific binding sites on…

Computational Complexity · Computer Science 2015-03-17 Ho-Lin Chen , David Doty , Shinnosuke Seki

We ask the question of how small a self-assembling set of tiles can be yet have interesting computational behaviour. We study this question in a model where supporting walls are provided as an input structure for tiles to grow along: we…

Emerging Technologies · Computer Science 2021-06-24 Matthew Cook , Tristan Stérin , Damien Woods

We analyze the number of tile types $t$, bins $b$, and stages necessary to assemble $n \times n$ squares and scaled shapes in the staged tile assembly model. For $n \times n$ squares, we prove $\mathcal{O}(\frac{\log{n} - tb - t\log t}{b^2}…

Computational Geometry · Computer Science 2016-09-14 Cameron Chalk , Eric Martinez , Robert Schweller , Luis Vega , Andrew Winslow , Tim Wylie

Self-assembly of complex and functional materials remains a grand challenge in soft material science. Efficient assembly depends on a delicate balance between thermodynamic and kinetic effects, requiring fine-tuning affinities and…

Soft Condensed Matter · Physics 2024-11-14 Wei-Shao Wei , Anthony Trubiano , Christian Sigl , Stefan Paquay , Hendrik Dietz , Michael F. Hagan , Seth Fraden

In this work we propose a generalization of Winfree's abstract Tile Assembly Model (aTAM) in which tile types are assigned rigid shapes, or geometries, along each tile face. We examine the number of distinct tile types needed to assemble…

Computational Geometry · Computer Science 2015-03-19 Bin Fu , Matthew J. Patitz , Robert T. Schweller , Bobby Sheline

In this paper we consider the problem of the strict self-assembly of infinite fractals within tile self-assembly. In particular, we provide tile assembly algorithms for the assembly of the discrete Sierpinski triangle and the discrete…

Computational Geometry · Computer Science 2015-05-26 Cameron T. Chalk , Dominic A. Fernandez , Alejandro Huerta , Mario A. Maldonado , Robert T. Schweller , Leslie Sweet

We show the first non-trivial positive algorithmic results (i.e. programs whose output is larger than their size), in a model of self-assembly that has so far resisted many attempts of formal analysis or programming: the planar…

Computational Geometry · Computer Science 2014-07-11 Pierre-Étienne Meunier

It is well known that the discrete Sierpinski triangle can be defined as the nonzero residues modulo 2 of Pascal's triangle, and that from this definition one can easily construct a tileset with which the discrete Sierpinski triangle…

Other Computer Science · Computer Science 2009-01-22 Steven M. Kautz , James I. Lathrop

We define the Reflexive Tile Assembly Model (RTAM), which is obtained from the abstract Tile Assembly Model (aTAM) by allowing tiles to reflect across their horizontal and/or vertical axes. We show that the class of directed temperature-1…

Computational Geometry · Computer Science 2015-03-13 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

We show the first asymptotically efficient constructions in the so-called "noncooperative planar tile assembly" model. Algorithmic self-assembly is the study of the local, distributed, asynchronous algorithms ran by molecules to…

Computational Complexity · Computer Science 2021-07-19 Pierre-Etienne Meunier , Damien Regnault

We study the problem of perfect tiling in the plane and exploring the possibility of tiling a rectangle using integral distinct squares. Assume a set of distinguishable squares (or equivalently a set of distinct natural numbers) is given,…

Computational Geometry · Computer Science 2025-03-14 Bahram Sadeghi Bigham , Mansoor Davoodi , Samaneh Mazaheri , Jalal Kheyrabadi

We present an active tile assembly model which extends Winfree's abstract tile assembly model to tiles that are capable of transmitting and receiving binding site activation signals. In addition, we introduce a mathematical framework to…

Emerging Technologies · Computer Science 2012-11-14 Natasha Jonoska , Daria Karpenko

We look at sets of tiles that can tile any region of size greater than 1 on the square grid. This is not the typical tiling question, but relates closely to it and therefore can help solve other tiling problems -- we give an example of…

Combinatorics · Mathematics 2015-11-11 Anne Kenyon , Martin Tassy