Related papers: Types for BioAmbients
In the context of computer models, calibration is the process of estimating unknown simulator parameters from observational data. Calibration is variously referred to as model fitting, parameter estimation/inference, an inverse problem, and…
Living organisms survive and multiply even though they have uncertain and incomplete information about their environment and imperfect models to predict the consequences of their actions. Bayesian models have been proposed to face this…
Measuring the thermodynamic properties of open quantum systems poses a major challenge. A calorimetric detection has been proposed as a feasible experimental scheme to measure work and fluctuation relations in open quantum systems. However,…
Systems biology uses large networks of biochemical reactions to model the functioning of biological cells from the molecular to the cellular scale. The dynamics of dissipative reaction networks with many well separated time scales can be…
Classical swarm models, exemplified by the Cucker--Smale framework, provide foundational insights into collective alignment but exhibit fundamental limitations in capturing the adaptive, heterogeneous behaviours intrinsic to living systems.…
The built environment provides an excellent setting for interdisciplinary research on the dynamics of microbial communities. The system is simplified compared to many natural settings, and to some extent the entire environment can be…
A broad class of systems, including ecological, epidemiological, and sociological ones, are characterized by populations of individuals assigned to specific categories, e.g., a chemical species, an opinion or an epidemic state, that are…
We will give a new model for measurements of a quantum system such that the measuring apparatuses are described by a unital separable non-type I nuclear simple C$^*$-algebra equipped with certain unital endomorphisms and pure states. An…
Shape types are a general concept of process types which work for many process calculi. We extend the previously published Poly* system of shape types to support name restriction. We evaluate the expressiveness of the extended system by…
The climate is a complex non-equilibrium dynamical system that relaxes toward a steady state under the continuous input of solar radiation and dissipative mechanisms. The steady state is not necessarily unique. A useful tool to describe the…
Compositional methods are central to the development and verification of software systems. They allow to break down large systems into smaller components, while enabling reasoning about the behaviour of the composed system. For concurrent…
Benchmarking, which involves collecting reference datasets and demonstrating method performances, is a requirement for the development of new computational tools, but also becomes a domain of its own to achieve neutral comparisons of…
We discuss the relevance of studying ecology within the framework of Complexity Science from a statistical mechanics approach. Ecology is concerned with understanding how systems level properties emerge out of the multitude of interactions…
Monitoring wellbeing and stress is one of the problems covered by ambient intelligence, as stress is a significant cause of human illnesses directly affecting our emotional state. The primary aim was to propose a deliberation architecture…
In this paper, we propose a Boltzmann-type kinetic description of mass-varying interacting multi-agent systems. Our agents are characterised by a microscopic state, which changes due to their mutual interactions, and by a label, which…
We show that active transport processes in biological systems can be understood through a local equilibrium description formulated at the mesoscale, the scale to describe stochastic processes. This new approach uses the method established…
We derive stochastic master equations for a quantum system interacting with a Bose field prepared in a superposition of continuous-mode coherent states. To determine a conditional evolution of the quantum system we use a collision model…
As a model of decohering environment, we show that quantum chaotic system behave equivalently as many-body system. An approximate formula for the time evolution of the reduced density matrix of a system interacting with a quantum chaotic…
This paper presents entropy maps, an approach to describing and visualising uncertainty among alternative potential movement intentions in pedestrian simulation models. In particular, entropy maps show the instantaneous level of randomness…
Cellular automata are a set of computational models in discrete space that have a discrete time evolution defined by neighbourhood rules. They are used to simulate many complex systems in physics and science in general. In this work,…