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We introduce a residence-time approach (RTA) for determining position-dependent diffusivities from biased molecular dynamics simulations. The method is formulated for trajectory segments in which the effective drift along the transport…

Soft Condensed Matter · Physics 2026-04-03 Rinto Thomas , Praveen Ranganath Prabhakar , Michael von Domaros

Dimensional analysis (DA) pays attention to fundamental physical dimensions such as length and mass when modelling scientific and engineering systems. It goes back at least a century to Buckingham's Pi theorem, which characterizes a…

Machine Learning · Computer Science 2023-12-19 G. Alexi Rodriguez-Arelis , William J. Welch

Flow based models such as Real NVP are an extremely powerful approach to density estimation. However, existing flow based models are restricted to transforming continuous densities over a continuous input space into similarly continuous…

Machine Learning · Computer Science 2020-08-27 Laurent Dinh , Jascha Sohl-Dickstein , Hugo Larochelle , Razvan Pascanu

Data assimilation (DA) improves prediction of chaotic systems by combining model forecasts with sparse, noisy observations. Many DA methods are inherently probabilistic, but accurate probabilistic DA is often computationally expensive…

Fluid Dynamics · Physics 2026-04-24 Aditya Sai Pranith Ayapilla , Kazuya Miyashita , Yuki Yasuda , Ryo Onishi

A Quantum Cellular Automaton (QCA) is essentially an operator driving the evolution of particles on a lattice, through local unitaries. Because $\Delta_t=\Delta_x = \epsilon$, QCAs constitute a privileged framework to cast the digital…

Quantum Physics · Physics 2026-01-21 Dogukan Bakircioglu , Pablo Arnault , Pablo Arrighi

This study aims at finding a method for constructing molecular dynamics like models using the formalism of cellular automata for fast simulation of fluid dynamic systems (including compressible phenomena). In as much as the results…

comp-gas · Physics 2009-09-25 Himanshu Agrawal

We propose the Fourier Adaptive Lite Diffusion Architecture (FALDA), a novel probabilistic framework for time series forecasting. First, we introduce the Diffusion Model for Residual Regression (DMRR) framework, which unifies…

Machine Learning · Computer Science 2025-05-19 Xinyan Wang , Rui Dai , Kaikui Liu , Xiangxiang Chu

Differentiable programming, enabled by automatic differentiation (AD), provides a robust framework for gradient-based optimization in computational plasma physics. While optimization is often only used towards design, we demonstrate that it…

Plasma Physics · Physics 2026-03-13 A. S. Joglekar , A. G. R. Thomas , A. L. Milder , K. G. Miller , J. P. Palastro , D. H. Froula

We develop a belief space planning (BSP) approach that advances the state of the art by incorporating reasoning about data association (DA) within planning, while considering additional sources of uncertainty. Existing BSP approaches…

Robotics · Computer Science 2016-06-17 Shashank Pathak , Antony Thomas , Asaf Feniger , Vadim Indelman

For computational acoustics, schemes need to have low-dispersion and low-dissipation properties in order to capture the amplitude and phase of the wave correctly. To improve the spectral properties of the scheme, the authors have previously…

Computational Physics · Physics 2021-11-15 Y. H. Li , Y. X. Ren , Y. T. Su

Diffusion models are cutting-edge generative models adept at producing diverse, high-quality images. Despite their effectiveness, these models often require significant computational resources owing to their numerous sequential denoising…

Computer Vision and Pattern Recognition · Computer Science 2025-06-09 Hongtao Huang , Xiaojun Chang , Lina Yao

The modeling of complex reaction-diffusion processes in, for instance, cellular biochemical networks or self-assembling soft matter can be tremendously sped up by employing a multiscale algorithm which combines the mesoscopic Green's…

Molecular Networks · Quantitative Biology 2017-04-05 Adithya Vijaykumar , Thomas E. Ouldridge , Pieter Rein ten Wolde , Peter G. Bolhuis

We tackle the problem of finding good architectures for multimodal classification problems. We propose a novel and generic search space that spans a large number of possible fusion architectures. In order to find an optimal architecture for…

Machine Learning · Computer Science 2019-03-18 Juan-Manuel Pérez-Rúa , Valentin Vielzeuf , Stéphane Pateux , Moez Baccouche , Frédéric Jurie

Computer simulation is an important tool for scientific progress, especially when lab experiments are either extremely costly and difficult or lack the required resolution. However, all of the simulation methods come with limitations. In…

Fluid Dynamics · Physics 2023-08-04 Edward R. Smith , Panagiotis E. Theodorakis

Drift diffusion models (DDMs) have found widespread use in computational neuroscience and other fields. They model evidence accumulation in simple decision tasks as a stochastic process drifting towards a decision barrier. In models where…

Methodology · Statistics 2025-12-12 Sicheng Liu , Alexander Fengler , Michael J. Frank , Matthew T. Harrison

We present a hybrid continuum-atomistic scheme which combines molecular dynamics (MD) simulations with on-the-fly machine learning techniques for the accurate and efficient prediction of multiscale fluidic systems. By using a Gaussian…

Fluid Dynamics · Physics 2016-03-16 David Stephenson , James R Kermode , Duncan A Lockerby

Quadratic discriminant analysis (QDA) is a standard tool for classification due to its simplicity and flexibility. Because the number of its parameters scales quadratically with the number of the variables, QDA is not practical, however,…

Methodology · Statistics 2018-09-06 Binyan Jiang , Xiangyu Wang , Chenlei Leng

We develop a Split Reactive Brownian Dynamics (SRBD) algorithm for particle simulations of reaction-diffusion systems based on the Doi or volume reactivity model, in which pairs of particles react with a specified Poisson rate if they are…

Statistical Mechanics · Physics 2018-09-05 Aleksandar Donev , Chiao-Yu Yang , Changho Kim

Machine learning models struggle with generalization when encountering out-of-distribution (OOD) samples with unexpected distribution shifts. For vision tasks, recent studies have shown that test-time adaptation employing diffusion models…

Computer Vision and Pattern Recognition · Computer Science 2024-04-03 Yun-Yun Tsai , Fu-Chen Chen , Albert Y. C. Chen , Junfeng Yang , Che-Chun Su , Min Sun , Cheng-Hao Kuo

Causal decomposition analysis (CDA) is an approach for modeling the impact of hypothetical interventions to reduce disparities. It is useful for identifying foci that future interventions, including multilevel and multimodal interventions,…

Methodology · Statistics 2026-04-28 John W. Jackson , Ting-Hsuan Chang , Aster Meche , Trang Q. Nguyen