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Transport of molecular motors along protein filaments in a half-closed geometry is a common feature of biologically relevant processes in cellular protrusions. Using a lattice gas model we study how the interplay between active and…

Biological Physics · Physics 2017-03-30 Isabella R. Graf , Erwin Frey

Vehicles in developing countries have widely varying dimensions and speeds, and drivers tend to not follow lane discipline. In this flow state called "mixed traffic", the interactions between drivers and the resulting maneuvers resemble…

Physics and Society · Physics 2018-08-01 Venkatesan Kanagaraj , Martin Treiber

A simple model of the driven motion of interacting particles in a two dimensional random medium is analyzed, focusing on the critical behavior near to the threshold that separates a static phase from a flowing phase with a steady-state…

Statistical Mechanics · Physics 2008-02-03 Joe Watson , Daniel S. Fisher

We study two new models of two particle species invading a surface from opposite sides. Collisions of particles of different species lead to the formation of congestion fronts. One of the models implements a reversible process whereas in…

Statistical Mechanics · Physics 2018-11-14 Bastian Burger , Hans J Herrmann

Recent experiments reveal both passive subdiffusion of various nanoparticles and anomalous active transport of such particles by molecular motors in the molecularly crowded environment of living biological cells. Passive and active…

Biological Physics · Physics 2014-03-24 Igor Goychuk , Vasyl O. Kharchenko , R. Metzler

Non-equilibrium transportation of particles through a restricted space (such as porous media or narrow channels) significantly differs from free space. With a simple model of two types of particles competing to transport via a passive…

Statistical Mechanics · Physics 2023-04-24 Chase Slowey , Zhiyue Lu

Along a microtubule, certain active motors propel themselves in one direction whereas others propel themselves in the opposite direction. For example, the cargo transporting motor proteins dynein and kinesin propel themselves towards the…

Soft Condensed Matter · Physics 2016-04-01 Anton Souslov , Paul M. Goldbart

Cytoskeletal motors known as motor proteins are molecules that drive cellular transport along several parallel cytoskeletal filaments and support many biological processes. Experimental evidences suggest that they interact with the nearest…

Statistical Mechanics · Physics 2017-11-22 Tripti Midha , A. K. Gupta

A system consisting of two parallel coupled channels where particles in one of them follow the rules of totally asymmetric exclusion processes (TASEP) and in another one move as in symmetric simple exclusion processes (SSEP) is investigated…

Statistical Mechanics · Physics 2009-11-13 K. Tsekouras , A. B. Kolomeisky

Several theoretical models based on totally asymmetric simple exclusion process (TASEP) have been extensively utilized to study various non-equilibrium transport phenomena. Inspired by the the role of microtubule-transported vesicles in…

Statistical Mechanics · Physics 2021-02-03 Akriti Jindal , Atul Kumar Verma , Arvind Kumar Gupta

A one-dimensional driven diffusive system with two types of particles and nearest neighbors interactions has been considered on a finite lattice with open boundaries. The particles can enter and leave the system from both ends of the…

Statistical Mechanics · Physics 2009-11-11 Farhad H. Jafarpour

We consider the unidirectional particle transport in a suspension of colloidal particles which interact with each other via a pair potential having a hard-core repulsion plus an attractive tail. The colloids are confined within a long…

Soft Condensed Matter · Physics 2011-06-24 Andrey Pototsky , Andrew J. Archer , Sergey E. Savel'ev , Uwe Thiele , Fabio Marchesoni

We study driven particle systems with excluded volume interactions on a two-lane ladder with periodic boundaries, using Monte Carlo simulation, cluster mean-field theory, and numerical solution of the master equation. Particles in one lane…

Statistical Mechanics · Physics 2009-11-13 Ronald Dickman , Ronaldo R. Vidigal

Molecular motors perform active movements along cytoskeletal filaments and drive the traffic of organelles and other cargo particles in cells. In contrast to the macroscopic traffic of cars, however, the traffic of molecular motors is…

Statistical Mechanics · Physics 2009-12-04 Stefan Klumpp , Melanie J. I. Müller , Reinhard Lipowsky

Simulating percolation and critical phenomena of labelled species inside films composed of single-component linear homogeneous macromolecules using molecular Monte Carlo method in 3 dimensions, we study dependence of these conducting…

Soft Condensed Matter · Physics 2019-09-05 Yuki Norizoe , Hiroshi Morita

We investigate the dynamics of a charged particle confined to move on a toroidal helix while being driven by an external time-dependent electric field. The underlying phase space is analyzed for linearly and circularly polarized fields. For…

Chaotic Dynamics · Physics 2021-06-02 Ansgar Siemens , Peter Schmelcher

Collective motion is ubiquitous in active systems at all length and time scales. The mechanisms behind such collective motion usually are alignment interactions between active particles, effective alignment after collisions between agents…

Soft Condensed Matter · Physics 2026-02-24 José Martín-Roca , Daniel Escobar Ortiz , Chantal Valeriani , Horacio Serna

The behavior of particles driven through a narrow constriction is investigated in experiment and simulation. The system of particles adapts to the confining potentials and the interaction energies by a self-consistent arrangement of the…

Soft Condensed Matter · Physics 2008-10-15 P. Henseler , A. Erbe , M. Köppl , P. Leiderer , P. Nielaba

The origins of the large differences observed to the rates with which the diverse particles are conveyed along axonal microtubules are still a matter of debate in the literature. There is evidence that certain neurodegenerative diseases may…

Subcellular Processes · Quantitative Biology 2020-09-30 Alexandre Y. C. Cho , Victor R. C. M. Roque , Carla Goldman

In cells, most of cargos are transported by motor proteins along microtubule. Biophysically, unidirectional motion of large number of motor proteins along a single track can be described by totally asymmetric simple exclusion process…

Subcellular Processes · Quantitative Biology 2015-03-06 Minghua Song , Yunxin Zhang
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