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Since the early days of digital communication, Hidden Markov Models (HMMs) have now been routinely used in speech recognition, processing of natural languages, images, and in bioinformatics. An HMM $(X_i,Y_i)_{i\ge 1}$ assumes observations…

Statistics Theory · Mathematics 2009-02-06 J. Lember , A. Koloydenko

In a hidden Markov model, the underlying Markov chain is usually hidden. Often, the maximum likelihood alignment (Viterbi alignment) is used as its estimate. Although having the biggest likelihood, the Viterbi alignment can behave very…

Methodology · Statistics 2013-07-31 Kristi Kuljus , Jüri Lember

The article studies different methods for estimating the Viterbi path in the Bayesian framework. The Viterbi path is an estimate of the underlying state path in hidden Markov models (HMMs), which has a maximum posterior probability (MAP).…

Computation · Statistics 2019-05-14 Jüri Lember , Dario Gasbarra , Alexey Koloydenko , Kristi Kuljus

Since the early days of digital communication, hidden Markov models (HMMs) have now been also routinely used in speech recognition, processing of natural languages, images, and in bioinformatics. In an HMM $(X_i,Y_i)_{i\ge 1}$, observations…

Statistics Theory · Mathematics 2012-07-24 J. Lember , A. Koloydenko

The article studies segmentation problem (also known as classification problem) with pairwise Markov models (PMMs). A PMM is a process where the observation process and underlying state sequence form a two-dimensional Markov chain, it is a…

Methodology · Statistics 2022-03-22 Kristi Kuljus , Jüri Lember

We present an asymptotic analysis of Viterbi Training (VT) and contrast it with a more conventional Maximum Likelihood (ML) approach to parameter estimation in Hidden Markov Models. While ML estimator works by (locally) maximizing the…

Machine Learning · Statistics 2013-12-18 Armen E. Allahverdyan , Aram Galstyan

Hidden Markov models (HMMs) are one of the most widely used statistical methods for analyzing sequence data. However, the reporting of output from HMMs has largely been restricted to the presentation of the most-probable (MAP) hidden state…

Methodology · Statistics 2015-05-01 Michalis K. Titsias , Christopher Yau , Christopher C. Holmes

The infinite Viterbi alignment is the limiting maximum a-posteriori estimate of the unobserved path in a hidden Markov model as the length of the time horizon grows. For models on state-space $\mathbb{R}^{d}$ satisfying a new…

Probability · Mathematics 2023-02-14 Nick Whiteley , Matt W. Jones , Aleks P. F. Domanski

We consider the problem of estimating the maximum posterior probability (MAP) state sequence for a finite state and finite emission alphabet hidden Markov model (HMM) in the Bayesian setup, where both emission and transition matrices have…

Machine Learning · Statistics 2020-04-20 Alexey Koloydenko , Kristi Kuljus , Jüri Lember

For hidden Markov models one of the most popular estimates of the hidden chain is the Viterbi path -- the path maximising the posterior probability. We consider a more general setting, called the pairwise Markov model (PMM), where the joint…

Information Theory · Computer Science 2021-03-23 Jüri Lember , Joonas Sova

For hidden Markov models one of the most popular estimates of the hidden chain is the Viterbi path -- the path maximising the posterior probability. We consider a more general setting, called the pairwise Markov model, where the joint…

Statistics Theory · Mathematics 2017-08-22 Jüri Lember , Joonas Sova

Hidden Markov models are traditionally decoded by the Viterbi algorithm which finds the highest probability state path in the model. In recent years, several limitations of the Viterbi decoding have been demonstrated, and new algorithms…

Data Structures and Algorithms · Computer Science 2013-08-06 Michal Nánási , Tomáš Vinař , Broňa Brejová

The EM procedure is a principal tool for parameter estimation in the hidden Markov models. However, applications replace EM by Viterbi extraction, or training (VT). VT is computationally less intensive, more stable and has more of an…

Computation · Statistics 2008-12-18 Jüri Lember , Alexey Koloydenko

We consider the smoothing probabilities of hidden Markov model (HMM). We show that under fairly general conditions for HMM, the exponential forgetting still holds, and the smoothing probabilities can be well approximated with the ones of…

Machine Learning · Statistics 2011-05-11 J. Lember

Approximate Bayesian computation (ABC) is a popular technique for approximating likelihoods and is often used in parameter estimation when the likelihood functions are analytically intractable. Although the use of ABC is widespread in many…

Statistics Theory · Mathematics 2011-03-29 Thomas A. Dean , Sumeetpal S. Singh , Ajay Jasra , Gareth W. Peters

An algorithm used to extract HMM parameters is revisited. Most parts of the extraction process are taken from implemented Hidden Markov Toolkit (HTK) program under name HInit. The algorithm itself shows a few variations compared to another…

Sound · Computer Science 2019-08-09 Zulkarnaen Hatala , Victor Puturuhu

An autoregressive process with Markov regime is an autoregressive process for which the regression function at each time point is given by a nonobservable Markov chain. In this paper we consider the asymptotic properties of the maximum…

Statistics Theory · Mathematics 2007-06-13 Randal Douc , Eric Moulines , Tobias Ryden

With the symbolic framework of Probability Bracket Notation (PBN), the Markov Sequence Projector (MSP) is introduced to expand the evolution formula of Homogeneous Markov Chains (HMCs). The well-known weather example, a Visible Markov Model…

Artificial Intelligence · Computer Science 2025-02-21 Xing M. Wang

In this paper, we introduce the on-line Viterbi algorithm for decoding hidden Markov models (HMMs) in much smaller than linear space. Our analysis on two-state HMMs suggests that the expected maximum memory used to decode sequence of length…

Data Structures and Algorithms · Computer Science 2010-01-25 Rastislav Šrámek , Broňa Brejová , Tomáš Vinař

Background: Hidden Markov models (HMM) are powerful machine learning tools successfully applied to problems of computational Molecular Biology. In a predictive task, the HMM is endowed with a decoding algorithm in order to assign the most…

Biomolecules · Quantitative Biology 2007-05-23 Piero Fariselli , Pier Luigi Martelli , Rita Casadio
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