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Systems biology models are useful models of complex biological systems that may require a large amount of experimental data to fit each model's parameters or to approximate a likelihood function. These models range from a few to thousands…

Quantitative Methods · Quantitative Biology 2024-07-12 Vincent D. Zaballa , Elliot E. Hui

Several recent unsupervised learning methods use probabilistic approaches to solve combinatorial optimization (CO) problems based on the assumption of statistically independent solution variables. We demonstrate that this assumption imposes…

Machine Learning · Computer Science 2023-11-27 Sebastian Sanokowski , Wilhelm Berghammer , Sepp Hochreiter , Sebastian Lehner

The singularity structure of solutions of a class of Hamiltonian systems of ordinary differential equations in two dependent variables is studied. It is shown that for any solution, all movable singularities, obtained by analytic…

Classical Analysis and ODEs · Mathematics 2013-12-17 Thomas Kecker

Broyden's method is a general method commonly used for nonlinear systems of equations, when very little information is available about the problem. We develop an approach based on Broyden's method for nonlinear eigenvalue problems. Our…

Numerical Analysis · Mathematics 2018-02-22 Elias Jarlebring

This paper proposes a new logic optimization paradigm based on circuit simulation, which reduces the need for Boolean computations such as SAT-solving or constructing BDDs. The paper develops a Boolean resubstitution framework to…

Logic in Computer Science · Computer Science 2020-07-07 Siang-Yun Lee , Heinz Riener , Alan Mishchenko , Robert K. Brayton , Giovanni De Micheli

A linear structural equation model relates random variables of interest and corresponding Gaussian noise terms via a linear equation system. Each such model can be represented by a mixed graph in which directed edges encode the linear…

Statistics Theory · Mathematics 2012-10-04 Rina Foygel , Jan Draisma , Mathias Drton

We study groups, exponential groups and ordered groups equipped with valuations. We investigate algebraic and topological features of such valued structures, and apply our findings in order to solve regular equations over groups using…

Group Theory · Mathematics 2025-08-13 Vincent Bagayoko

Many scientific datasets are of high dimension, and the analysis usually requires visual manipulation by retaining the most important structures of data. Principal curve is a widely used approach for this purpose. However, many existing…

Artificial Intelligence · Computer Science 2016-01-19 Qi Mao , Li Wang , Ivor W. Tsang , Yijun Sun

We present a SAT framework which allows to investigate properties of simple drawings of the complete graph $K_n$ using the power of AI. In contrast to classic imperative programming, where a program is operated step by step, our framework…

Computational Geometry · Computer Science 2025-04-04 Helena Bergold , Manfred Scheucher

This paper proposes an algorithm for deciding consistency of systems of Boolean equations in several variables with co-efficients in the two element Boolean algebra $B_{0}=\{0,1\}$ and find all satisfying assignments. The algorithm is based…

Data Structures and Algorithms · Computer Science 2014-07-16 Virendra Sule

We consider bifurcation of solutions from a given trivial branch for a class of strongly indefinite elliptic systems via the spectral flow. Our main results establish bifurcation invariants that can be obtained from the coefficients of the…

Analysis of PDEs · Mathematics 2015-12-15 Nils Waterstraat

In this paper, we address the problem of identifying linear structural equation models. We first extend the edge set half-trek criterion to cover a broader class of models. We then show that any semi-Markovian linear model can be…

Artificial Intelligence · Computer Science 2015-08-11 Bryant Chen

Determining whether two graphs are structurally identical is a fundamental problem with applications spanning mathematics, computer science, chemistry, and network science. Despite decades of study, graph isomorphism remains a challenging…

Computational Physics · Physics 2026-04-10 Sara Najem , Amer E. Mouawad

The "bisimulation problem" for equational graphs of finite out-degree is shown to be decidable. We reduce this problem to the bisimulation problem for deterministic rational (vectors of) boolean series on the alphabet of a dpda M. We then…

Logic in Computer Science · Computer Science 2007-05-23 G. Senizergues

Valuation algebras abstract a large number of formalisms for automated reasoning and enable the definition of generic inference procedures. Many of these formalisms provide some notions of solutions. Typical examples are satisfying…

Artificial Intelligence · Computer Science 2014-02-27 Jordi Roca-Lacostena , Jesus Cerquides

The concept of symbolic sequences play important role in study of complex systems. In the work we are interested in ultrametric structure of the set of cyclic sequences naturally arising in theory of dynamical systems. Aimed at construction…

Mathematical Physics · Physics 2016-06-22 Vladimir Al. Osipov

We analyze the Poisson structure of the time-dependent mean-field equations for bosons and construct the Lie-Poisson bracket associated to these equations. The latter follow from the time-dependent variational principle of Balian and…

High Energy Physics - Theory · Physics 2009-10-30 Mohamed Benarous

This work is devoted to the establishment of a Poisson structure for a format of equations known as Generalized Lotka-Volterra systems. These equations, which include the classical Lotka-Volterra systems as a particular case, have been…

Mathematical Physics · Physics 2019-11-01 Benito Hernández-Bermejo , Victor Fairén

Identifying a coupled dynamical system out of many plausible candidates, each of which could serve as the underlying generator of some observed measurements, is a profoundly ill posed problem that commonly arises when modelling real world…

Neurons and Cognition · Quantitative Biology 2019-09-17 Amirhossein Jafarian , Peter Zeidman , Vladimir Litvak , Karl Friston

This paper investigates the structure of fully nonlinear equations and their applications to geometric problems. We solve some fully nonlinear version of the Loewner-Nirenberg and Yamabe problems. Notably, we introduce Morse theory…

Analysis of PDEs · Mathematics 2025-03-25 Rirong Yuan