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Kendall shape spaces are a widely used framework for the statistical analysis of shape data arising from many domains, often requiring the parallel transport as a tool to normalise time series data or transport gradient in optimisation…

Differential Geometry · Mathematics 2021-03-09 Nicolas Guigui , Elodie Maignant , Alain Trouvé , Xavier Pennec

The analysis of manifold-valued data requires efficient tools from Riemannian geometry to cope with the computational complexity at stake. This complexity arises from the always-increasing dimension of the data, and the absence of…

Computer Vision and Pattern Recognition · Computer Science 2017-11-27 Maxime Louis , Alexandre Bône , Benjamin Charlier , Stanley Durrleman

We analytically determine Jacobi fields and parallel transports and compute geodesic regression in Kendall's shape space. Using the derived expressions, we can fully leverage the geometry via Riemannian optimization and thereby reduce the…

Optimization and Control · Mathematics 2020-07-16 Esfandiar Nava-Yazdani , Hans-Christian Hege , T. J. Sullivan , Christoph von Tycowicz

Based on a local approximation of the Riemannian distance on a manifold by a computationally cheap dissimilarity measure, a time discrete geodesic calculus is developed, and applications to shape space are explored. The dissimilarity…

Numerical Analysis · Mathematics 2012-10-03 Martin Rumpf , Benedikt Wirth

In the elastic shape analysis approach to shape matching and object classification, plane curves are represented as points in an infinite-dimensional Riemannian manifold, wherein shape dissimilarity is measured by geodesic distance. A…

Differential Geometry · Mathematics 2018-07-11 Tom Needham

In this work, a new model for macroscopic plant tissue growth based on dynamical Riemannian geometry is presented. We treat 1D and 2D tissues as continuous, deformable, growing geometries for sizes larger than 1mm. The dynamics of the…

Tissues and Organs · Quantitative Biology 2016-02-05 Julia Pulwicki

A new model for biological growth is introduced that couples the geometry of an organism (or part of the organism) to the flow and deposition of material. The model has three dynamical variables (a) a Riemann metric tensor for the geometry,…

Biological Physics · Physics 2010-10-05 Julia Pulwicki , David Hobill

This paper introduces a set of numerical methods for Riemannian shape analysis of 3D surfaces within the setting of invariant (elastic) second-order Sobolev metrics. More specifically, we address the computation of geodesics and geodesic…

Computer Vision and Pattern Recognition · Computer Science 2025-01-07 Emmanuel Hartman , Yashil Sukurdeep , Eric Klassen , Nicolas Charon , Martin Bauer

We propose a novel framework to learn the spatiotemporal variability in longitudinal 3D shape data sets, which contain observations of objects that evolve and deform over time. This problem is challenging since surfaces come with arbitrary…

Computer Vision and Pattern Recognition · Computer Science 2021-08-23 Hamid Laga , Marcel Padilla , Ian H. Jermyn , Sebastian Kurtek , Mohammed Bennamoun , Anuj Srivastava

This paper introduces a novel computational framework for modeling and analyzing the spatiotemporal shape variability of tree-like 4D structures whose shapes deform and evolve over time. Tree-like 3D objects, such as botanical trees and…

Computational Geometry · Computer Science 2025-09-24 Tahmina Khanam , Hamid Laga , Mohammed Bennamoun , Guanjin Wang , Ferdous Sohel , Farid Boussaid , Guan Wang , Anuj Srivastava

This paper reviews several Riemannian metrics and evolution equations in the context of diffeomorphic shape analysis. After a short review of of various approaches at building Riemannian spaces of shapes, with a special focus on the…

Differential Geometry · Mathematics 2022-05-04 Nicolas Charon , Laurent Younes

The statistical analysis of data lying on a differentiable, locally Euclidean, manifold introduces a variety of challenges because the analogous measures to standard Euclidean statistics are local, that is only defined within a…

Methodology · Statistics 2015-11-12 Stephen Marsland , Carole J Twining

Growth pattern dynamics lie at the heart of morphogenesis. Here, we investigate the growth of plant leaves. We compute the conformal transformation that maps the contour of a leaf at a given stage onto the contour of the same leaf at a…

Tissues and Organs · Quantitative Biology 2016-11-23 Karen Alim , Shahaf Armon , Boris I. Shraiman , Arezki Boudaoud

We analyze a variational time discretization of geodesic calculus on finite- and certain classes of infinite-dimensional Riemannian manifolds. We investigate the fundamental properties of discrete geodesics, the associated discrete…

Numerical Analysis · Mathematics 2013-03-25 Martin Rumpf , Benedikt Wirth

This article presents a new mathematical framework to perform statistical analysis on time-indexed sequences of 2D or 3D shapes. At the core of this statistical analysis is the task of time interpolation of such data. Current models in use…

Optimization and Control · Mathematics 2010-03-23 Alain Trouvé , François-Xavier Vialard

In this paper the space of images is considered as a Riemannian manifold using the metamorphosis approach, where the underlying Riemannian metric simultaneously measures the cost of image transport and intensity variation. A robust and…

Numerical Analysis · Mathematics 2015-05-28 Benjamin Berkels , Alexander Effland , Martin Rumpf

In shape analysis, the concept of shape spaces has always been vague, requiring a case-by-case approach for every new type of shape. In this paper, we give a general definition for an abstract space of shapes in a manifold. This notion…

Differential Geometry · Mathematics 2015-04-09 Sylvain Arguillère

Kendall's Similarity Shape Theory for constellations of points in the carrier space $\mathbb{R}^n$ was developed for use in Probability and Statistics. It was subsequently shown to reside within (Classical and Quantum) Mechanics'…

General Relativity and Quantum Cosmology · Physics 2018-03-30 Edward Anderson

We propose the first comprehensive approach for modeling and analyzing the spatiotemporal shape variability in tree-like 4D objects, i.e., 3D objects whose shapes bend, stretch, and change in their branching structure over time as they…

Computer Vision and Pattern Recognition · Computer Science 2024-08-23 Tahmina Khanam , Hamid Laga , Mohammed Bennamoun , Guanjin Wang , Ferdous Sohel , Farid Boussaid , Guan Wang , Anuj Srivastava

In the shape analysis approach to computer vision problems, one treats shapes as points in an infinite-dimensional Riemannian manifold, thereby facilitating algorithms for statistical calculations such as geodesic distance between shapes…

Differential Geometry · Mathematics 2018-03-30 Sebastian Kurtek , Tom Needham
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