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Related papers: Population Dynamics on Complex Food Webs

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We introduce an evolutionary metacommunity of multitrophic food webs on several habitats coupled by migration. In contrast to previous studies that focus either on evolutionary or on spatial aspects, we include both and investigate the…

Populations and Evolution · Quantitative Biology 2018-04-20 Korinna T. Allhoff , Eva Marie Weiel , Tobias Rogge , Barbara Drossel

We consider networks of dynamical units that evolve in time according to different laws, and are coupled to each other in highly irregular ways. Studying how to steer the dynamics of such systems towards a desired evolution is of great…

Physics and Society · Physics 2020-12-01 Ricardo Gutiérrez , Massimo Materassi , Stefano Focardi , Stefano Boccaletti

We present a general model for the growth of weighted networks in which the structural growth is coupled with the edges' weight dynamical evolution. The model is based on a simple weight-driven dynamics and a weights' reinforcement…

Statistical Mechanics · Physics 2009-11-10 Alain Barrat , Marc Barthelemy , Alessandro Vespignani

We analyze the properties of seven community food webs from a variety of environments--including freshwater, marine-freshwater interfaces and terrestrial environments. We uncover quantitative unifying patterns that describe the properties…

Disordered Systems and Neural Networks · Physics 2009-11-07 J. Camacho , R. Guimera , L. A. N. Amaral

Networked structures arise in a wide array of different contexts such as technological and transportation infrastructures, social phenomena, and biological systems. These highly interconnected systems have recently been the focus of a great…

Statistical Mechanics · Physics 2009-11-10 Alain Barrat , Marc Barthelemy , Romualdo Pastor-Satorras , Alessandro Vespignani

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

Statistical Mechanics · Physics 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

Notable recent works have focused on the multi-layer properties of coevolving diseases. We point out that very similar systems play an important role in population ecology. Specifically we study a meta food-web model that was recently…

Physics and Society · Physics 2016-03-23 Edmund Barter , Thilo Gross

Genetic regulatory networks are defined by their topology and by a multitude of continuously adjustable parameters. Here we present a class of simple models within which the relative importance of topology vs. interaction strengths becomes…

Molecular Networks · Quantitative Biology 2013-08-02 Mikhail Tikhonov , William Bialek

Quantifying interaction strength between species is of interest in food web studies for understanding population dynamics. Theory has run ahead of experiment in solving equations describing ecological systems (the Lotka-Volterra equations,…

Populations and Evolution · Quantitative Biology 2013-05-07 Joshua M. Courtney , Amy C. Courtney , Michael W. Courtney

A detailed analysis of three species-rich ecosystem food webs has shown that they display scale-free distributions of connections. Such graphs of interaction are in fact shared by a number of biological and technological networks, which…

Disordered Systems and Neural Networks · Physics 2007-05-23 Ricard V. Sole Jose M. Montoya

We propose a minimal model of the dynamics of diversity -- replicator equations with extinction, invasion and mutation. We numerically study the behavior of this simple model and show that it displays completely different behavior from the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kei Tokita , Ayumu Yasutomi

Character evolution that affects ecological community interactions often occurs contemporaneously with temporal changes in population size, potentially altering the very nature of those dynamics. Such eco-evolutionary processes may be most…

Populations and Evolution · Quantitative Biology 2012-06-12 Laura E. Jones , Lutz Becks , Stephen P. Ellner , Nelson G. Hairston , Takehito Yoshida , Gregor F. Fussmann

We investigate the dynamics of two models of biological networks with purely suppressive interactions between the units; species interacting via niche competition and neurons via inhibitory synaptic coupling. In both of these cases,…

Disordered Systems and Neural Networks · Physics 2015-08-12 David A. Kessler , Herbert Levine

To describe population dynamics, it is crucial to take into account jointly evolution mechanisms and spatial motion. However, the models which include these both aspects, are not still well-understood. Can we extend the existing results on…

Analysis of PDEs · Mathematics 2014-01-07 Hélène Leman , Sylvie Meleard , Sepideh Mirrahimi

The structure and dynamics of a typical biological system are complex due to strong and inhomogeneous interactions between its constituents. The investigation of such systems with classical mathematical tools, such as differential equations…

Molecular Networks · Quantitative Biology 2008-02-15 Murat Tuğrul

It is a challenge to predict the response of a large, complex system to a perturbation. Recent attempts to predict the behaviour of food webs have revealed that the effort needed to understand a system grows quickly with its complexity,…

Populations and Evolution · Quantitative Biology 2013-11-07 Helge Aufderheide , Lars Rudolf , Thilo Gross , Kevin D. Lafferty

A fundamental problem in ecology is to understand how competition shapes biodiversity and species coexistence. Historically, one important approach for addressing this question has been to analyze consumer resource models using geometric…

Populations and Evolution · Quantitative Biology 2023-10-31 Emmy Blumenthal , Pankaj Mehta

We introduce a new predator-prey model by replacing the growth and predation constant by a square matrix, and the population density as a population vector. The classical Lotka-Volterra model describes a population that either modulates or…

Populations and Evolution · Quantitative Biology 2024-12-31 Pico Gilman , Steven J. Miller , Daeyoung Son , Saad Waheed , Janine Wang

The network paradigm is increasingly used to describe the topology and dynamics of complex systems. Here we review the results of the topological analysis of protein structures as molecular networks describing their small-world character,…

Biomolecules · Quantitative Biology 2007-06-10 Csaba Bode , Istvan A. Kovacs , Mate S. Szalay , Robin Palotai , Tamas Korcsmaros , Peter Csermely

We extend the study of a model of competitive cluster growth in an active medium to a basis of networks; this is done by adding nonlocal connections with probability $p$ to sites on a regular lattice, thus enabling one to interpolate…

Statistical Mechanics · Physics 2010-12-10 N. Nirmal Thyagu , Anita Mehta