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Systems consisting of a single ordinary differential equation coupled with one reaction-diffusion equation in a bounded domain and with the Neumann boundary conditions are studied in the case of particular nonlinearities from the…

Analysis of PDEs · Mathematics 2022-07-01 Szymon Cygan , Anna Marciniak-Czochra , Grzegorz Karch

This work explores the influence of domain size of a non-compact two dimensional annular domain on the evolution of pattern formation that is modelled by an \textit{activator-depleted} reaction-diffusion system. A closed form expression is…

Dynamical Systems · Mathematics 2018-07-06 Wakil Sarfaraz , Anotida Madzvamuse

Mass-conserving reaction-diffusion (MCRD) systems are widely used to model phase separation and pattern formation in cell polarity, biomolecular condensates, and ecological systems. Numerical simulations and formal asymptotic analysis…

Analysis of PDEs · Mathematics 2026-02-09 Xiaoqing He , Quan-Xing Liu , Dong Ye

In a convergence of machine learning and biology, we reveal that diffusion models are evolutionary algorithms. By considering evolution as a denoising process and reversed evolution as diffusion, we mathematically demonstrate that diffusion…

Neural and Evolutionary Computing · Computer Science 2026-05-12 Yanbo Zhang , Benedikt Hartl , Hananel Hazan , Michael Levin

This paper is concerned with the spatio-temporal dynamics of nonnegative bounded entire solutions of some reaction-diffusion equations in R N in any space dimension N. The solutions are assumed to be localized in the past. Under certain…

Analysis of PDEs · Mathematics 2020-05-18 F. Hamel , H Ninomiya

We consider general multi-species models of reaction diffusion processes and obtain a set of constraints on the rates which give rise to closed systems of equations for correlation functions. Our results are valid in any dimension and on…

Statistical Mechanics · Physics 2009-11-07 Vahid Karimipour

The transport and chemical reactions of solutes are modelled as a cellular automaton in which molecules of different species perform a random walk on a regular lattice and react according to a local probabilistic rule. The model describes…

comp-gas · Physics 2009-10-22 T. Karapiperis , B. Blankleider

We propose and study a new model to describe biological invasions constrained on infinite homogeneous one dimensional metric graphs. Our model consists of an infinite PDE-ODE system where, at each vertex of the one-dimensional lattice…

Analysis of PDEs · Mathematics 2025-11-21 Grégory Faye , Jean-Michel Roquejoffre , Min Zhao

A general system of several ordinary differential equations coupled with a reaction-diffusion equation in a bounded domain with zero-flux boundary condition is studied in the context of pattern formation. These initial-boundary value…

Analysis of PDEs · Mathematics 2021-10-29 Szymon Cygan , Anna Marciniak-Czochra , Grzegorz Karch , Kanako Suzuki

We analyze the static response to perturbations of nonequilibrium steady states that can be modeled as one-dimensional diffusions on the circle. We demonstrate that an arbitrary perturbation can be broken up into a combination of three…

Statistical Mechanics · Physics 2022-01-11 Qi Gao , Hyun-Myung Chun , Jordan M. Horowitz

A voting model (or a generalization of the Glauber model at zero temperature) on a multidimensional lattice is defined as a system composed of a lattice each site of which is either empty or occupied by a single particle. The reactions of…

Statistical Mechanics · Physics 2007-05-23 F. Roshani , A. Aghamohammadi , M. Khorrami

The most general single species autonomous reaction-diffusion model on a Cayley tree with nearest-neighbor interactions is introduced. The stationary solutions of such models, as well as their dynamics, are discussed. To study dynamics of…

Mathematical Physics · Physics 2014-07-22 Mohammad Khorrami , Amir Aghamohammadi

Repulsion between individuals within a finite radius is encountered in numerous applications, including cell exclusion, i.e. avoidance of overlapping cells, bird flocks, or microscopic pedestrian models. We define such individual based…

Analysis of PDEs · Mathematics 2023-10-06 Michael Fischer , Laura Kanzler , Christian Schmeiser

We study the asymptotic diffusion processes with (generally nonlocal) open boundaries in one dimension which are exactly solvable by means of the recently developed recursion formula. We investigate the stationary states, which cannot be…

Statistical Mechanics · Physics 2007-05-23 Akira FUJII

We describe how to implement the time-dependent variational principle for matrix product states in the thermodynamic limit for nonuniform lattice systems. This is achieved by confining the nonuniformity to a (dynamically growable) finite…

Strongly Correlated Electrons · Physics 2013-10-18 Ashley Milsted , Jutho Haegeman , Tobias J. Osborne , Frank Verstraete

Nonequilibrium statistical models of point vortex systems are constructed using an optimal closure method, and these models are employed to approximate the relaxation toward equilibrium of systems governed by the two-dimensional Euler…

Fluid Dynamics · Physics 2018-12-26 Jonathan Maack , Bruce Turkington

Diffusion models have shown remarkable performance on many generative tasks. Despite recent success, most diffusion models are restricted in that they only allow linear transformation of the data distribution. In contrast, broader family of…

Machine Learning · Computer Science 2024-06-04 Grigory Bartosh , Dmitry Vetrov , Christian A. Naesseth

This article studies the quasi-stationary behaviour of absorbed one-dimensional diffusions. We obtain necessary and sufficient conditions for the exponential convergence to a unique quasi-stationary distribution in total variation,…

Probability · Mathematics 2017-03-03 Nicolas Champagnat , Denis Villemonais

One-dimensional reaction-diffusion systems are mapped through a similarity transformation onto integrable (and a priori non-stochastic) quantum chains. Time-dependent properties of these chemical models can then be found exactly. The…

Statistical Mechanics · Physics 2009-10-28 Malte Henkel , Enzo Orlandini , Jaime Santos

We discuss a numerical method for convection-diffusion-reaction problems with a free boundary in 1D. The method is based on the numerical modelling of the interface evolution, the transformation to a fixed domain problem and the…

Numerical Analysis · Mathematics 2009-09-03 Gabriela Kacurova