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Gene Ontology (GO) is the most important resource for gene function annotation. It provides a way to unify biological knowledge across different species via a dynamic and controlled vocabulary. GO is now widely represented in the Semantic…

Genomics · Quantitative Biology 2019-09-26 Yanying Wu

Phylogenetic reconstruction aims at finding plausible hypotheses of the evolutionary history of genes or species based on genomic sequence information. The distinction of orthologous genes (genes that having a common ancestry and diverged…

Populations and Evolution · Quantitative Biology 2016-02-29 Marc Hellmuth , Nicolas Wieseke

Document databases are becoming popular, but how to present complex document query to obtain useful information from the document remains an important topic to study. In this paper, we describe the design issues of a pattern-based document…

Databases · Computer Science 2015-04-16 Xuhui Li , Mengchi Liu , Xiaoying Wu , Shanfeng Zhu

Ontologies have proven beneficial in different settings that make use of textual reviews. However, manually constructing ontologies is a laborious and time-consuming process in need of automation. We propose a novel methodology for…

Computation and Language · Computer Science 2021-05-25 Joel Oksanen , Oana Cocarascu , Francesca Toni

In the materials design domain, much of the data from materials calculations are stored in different heterogeneous databases. Materials databases usually have different data models. Therefore, the users have to face the challenges to find…

Databases · Computer Science 2020-11-06 Huanyu Li , Rickard Armiento , Patrick Lambrix

This paper describes a geometry based technique for feature extraction applicable to segmentation-based word recognition systems. The proposed system extracts the geometric features of the character contour. This features are based on the…

Computer Vision and Pattern Recognition · Computer Science 2015-03-13 Dinesh Dileep Gaurav , Renu Ramesh

Many concept-to-text generation systems require domain-specific linguistic resources to produce high quality texts, but manually constructing these resources can be tedious and costly. Focusing on NaturalOWL, a publicly available state of…

Computation and Language · Computer Science 2018-11-01 Gerasimos Lampouras , Ion Androutsopoulos

A challenge of managing and extracting useful knowledge from social media data sources has attracted much attention from academic and industry. To address this challenge, semantic analysis of textual data is focused in this paper. We…

Information Retrieval · Computer Science 2018-07-09 Pornpit Wongthontham , Bilal Abu-Salih

The present study is aimed at analysing the benefits of an ontological approach in Functional Structural Plant Modelling. The ontological approach has been used at two levels, to refine the conceptual modelling approach, and to define the…

Applied Physics · Physics 2022-08-17 Giuliano Vitali

Athena is the ATLAS off-line software framework, based upon the GAUDI architecture from LHCb. As part of ATLAS' continuing efforts to enhance and customise the architecture to meet our needs, we have developed a data object description tool…

Software Engineering · Computer Science 2008-11-26 Alain Bazan , Thierry Bouedo , Philippe Ghez , Massimo Marino , Craig Tull

In a data warehousing process, mastering the data preparation phase allows substantial gains in terms of time and performance when performing multidimensional analysis or using data mining algorithms. Furthermore, a data warehouse can…

Databases · Computer Science 2007-05-23 Jérôme Darmont , Omar Boussaïd , Fadila Bentayeb

Background. Endowing intelligent systems with semantic data commonly requires designing and instantiating ontologies with domain-specific knowledge. Especially in the early phases, those activities are typically performed manually by human…

Artificial Intelligence · Computer Science 2025-01-24 Giovanni Ciatto , Andrea Agiollo , Matteo Magnini , Andrea Omicini

Schema Matching is a method of finding attributes that are either similar to each other linguistically or represent the same information. In this project, we take a hybrid approach at solving this problem by making use of both the provided…

Databases · Computer Science 2020-04-22 Tanvi Sahay , Ankita Mehta , Shruti Jadon

Query optimization has been studied using machine learning, reinforcement learning, and, more recently, graph-based convolutional networks. Ontology, as a structured, information-rich knowledge representation, can provide context,…

Databases · Computer Science 2025-11-11 Songhui Yue , Yang Shao , Sean Hayes

Recent work has shown that Large Language Models (LLMs) are not only a suitable tool for code generation but also capable of generating annotation-based code specifications. Scaling these methodologies may allow us to deduce provable…

Software Engineering · Computer Science 2025-06-26 Samuel Teuber , Bernhard Beckert

Interoperability of potentially heterogeneous databases has been an ongoing research issue for a number of years in the database community. With the trend towards globalization of data location and data access and the consequent requirement…

Instrumentation and Detectors · Physics 2007-05-23 J. -M. Le Goff , H. Stockinger , I. Willers , R. McClatchey , Z. Kovacs , P. Martin , N. Bhatti , W. Hassan

Building an ontology is not only a time-consuming process, but it is also confusing, especially for beginners and the inexperienced. Although ontology developers can take the help of domain experts in building an ontology, they are not…

Artificial Intelligence · Computer Science 2022-02-07 Pramit Bhattacharyya , Raghava Mutharaju

Big Data architectures allow to flexibly store and process heterogeneous data, from multiple sources, in their original format. The structure of those data, commonly supplied by means of REST APIs, is continuously evolving. Thus data…

Databases · Computer Science 2018-02-05 Sergi Nadal , Oscar Romero , Alberto Abelló , Panos Vassiliadis , Stijn Vansummeren

Ontologies are a popular way of representing domain knowledge, in particular, knowledge in domains related to life sciences. (Semi-)automating the process of building an ontology has attracted researchers from different communities into a…

Artificial Intelligence · Computer Science 2021-03-26 Ana Ozaki

Ontology learning is a critical task in industry, dealing with identifying and extracting concepts captured in text data such that these concepts can be used in different tasks, e.g. information retrieval. Ontology learning is non-trivial…

Information Retrieval · Computer Science 2019-03-12 Yiming Xu , Dnyanesh Rajpathak , Ian Gibbs , Diego Klabjan