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This paper proposes a control theoretic framework to model and analyze the self-organized pattern formation of molecular concentrations in biomolecular communication networks, emerging applications in synthetic biology. In biomolecular…

Molecular Networks · Quantitative Biology 2019-01-08 Yutaka Hori , Hiroki Miyazako , Soichiro Kumagai , Shinji Hara

Diffusion plays an important role in a wide variety of phenomena, from bacterial quorum sensing to the dynamics of traffic flow. While it generally tends to level out gradients and inhomogeneities, diffusion has nonetheless been shown to…

Pattern Formation and Solitons · Physics 2024-07-03 Alexandre Champagne-Ruel , Sascha Zakaib-Bernier , Paul Charbonneau

The Drosophila larva, a soft-body animal, can bend its body and roll efficiently to escape danger. However, contrary to common belief, this rolling motion is not driven by the imbalance of gravity and ground reaction forces. Through…

Turing's theory of pattern formation has been used to describe the formation of self-organised periodic patterns in many biological, chemical and physical systems. However, the use of such models is hindered by our inability to predict, in…

Pattern Formation and Solitons · Physics 2021-02-03 Srikanth Subramanian , Sean M. Murray

Pattern formation in reaction-diffusion systems is of great importance in surface micro-patterning [Grzybowski et al. Soft Matter. 1, 114 (2005)], self-organization of cellular micro-organisms [Schulz et al. Annu. Rev. Microbiol. 55, 105…

Soft Condensed Matter · Physics 2015-05-19 S. G. Ayodele , F. Varnik , D. Raabe

Pattern-forming fronts are often controlled by an external stimulus which progresses through a stable medium at a fixed speed, rendering it unstable in its wake. By controlling the speed of excitation, such stimuli, or "triggers," can…

Dynamical Systems · Mathematics 2017-08-15 Ryan Goh , Arnd Scheel

Diagonal or chevron patterns are known to spontaneously emerge at the intersection of two perpendicular flows of self-propelled particles, e.g. pedestrians. The instability responsible for this pattern formation has been studied in previous…

Statistical Mechanics · Physics 2015-06-15 Julien Cividini , Cecile Appert-Rolland

We present a theory of pattern formation in growing domains inspired by biological examples of tissue development. Gradients of signaling molecules regulate growth, while growth changes these graded chemical patterns by dilution and…

Reaction-Diffusion (RD) systems provide a computational framework that governs many pattern formation processes in nature. Current RD system design practices boil down to trial-and-error parameter search. We propose a differentiable…

Neural and Evolutionary Computing · Computer Science 2021-07-15 Alexander Mordvintsev , Ettore Randazzo , Eyvind Niklasson

The properties of a front between two different phases in the presence of a smoothly inhomogeneous external field that takes its critical value at the crossing point is analyzed. Two generic scenarios are studied. In the first, the system…

Pattern Formation and Solitons · Physics 2015-08-17 Haim Weissmann , Nadav M. Shnerb , David A. Kessler

In this paper, we investigate the emergence of a predator-prey system with Ivlev-type functional response and reaction-diffusion. We study how diffusion affects the stability of predator-prey coexistence equilibrium and derive the…

Populations and Evolution · Quantitative Biology 2008-01-08 Weiming Wang , Lei Zhang , Hailing Wang , Zhenqing Li

Patterns of different symmetries may arise after solution to reaction-diffusion equations. Hexagonal arrays, layers and their perturbations are observed in different models after numerical solution to the corresponding initial-boundary…

Soft Condensed Matter · Physics 2015-09-10 Vladimir Mityushev

Spontaneous pattern formation in homogeneous systems is ubiquitous in nature. Although Turing demonstrated that spatial patterns can emerge in reaction-diffusion (RD) systems when the homogeneous state becomes linearly unstable, it remains…

Biological Physics · Physics 2024-08-20 Shuonan Wu , Bing Yu , Yuhai Tu , Lei Zhang

We consider a reaction-diffusion process with retardation. The particles, immersed in traps initially, remain inactive until another particle is annihilated spontaneously with a rate $\lambda$ at a certain point $\vec x$. In that case the…

Statistical Mechanics · Physics 2015-06-25 Michael Schulz , Steffen Trimper , Knud Zabrocki

Enhancement of the predictive power and robustness of nonlinear population dynamics models allows ecologists to make more reliable forecasts about species' long term survival. However, the limited availability of detailed ecological data,…

Pattern Formation and Solitons · Physics 2025-04-18 Indrajyoti Gaine , Malay Banerjee

The microscopic structure and movement of reaction fronts in reaction diffusion systems far from equilibrium are investigated. We show that some three-site interaction models exhibit exact diffusive shock measures, i.e. domains of different…

Statistical Mechanics · Physics 2009-11-10 Matthias Paessens , Gunter M. Schuetz

We performed an extensive numerical study of a two-dimensional reaction-diffusion system of the activator-inhibitor type in which domain patterns can form. We showed that both multidomain and labyrinthine patterns may form spontaneously as…

patt-sol · Physics 2016-09-08 C. B. Muratov , V. V. Osipov

In this work we investigate the process of pattern formation induced by nonlinear diffusion in a reaction-diffusion system with Lotka-Volterra predator-prey kinetics. We show that the cross-diffusion term is responsible of the destabilizing…

Pattern Formation and Solitons · Physics 2014-02-20 Eleonora Tulumello , Maria Carmela Lombardo , Marco Sammartino

Morphogenesis is the ensemble of processes that determines form, shape and patterns in organisms. Based on a reaction-diffusion theoretical setting and some prototype reaction schemes, we make a review of the models and experiments that…

Cell Behavior · Quantitative Biology 2007-05-23 Rui Dilao

We report on the first observation of white-eye pattern in an air dielectric barrier discharge. The patterned discharges undergo a development as following: random spots - quasihexagonal pattern - hexagonal pattern (type I) - hexagonal…

Plasma Physics · Physics 2011-03-04 Yafeng He , Lifang Dong , Weili Liu , Hongfang Wang , Zengchao Zhao , Weili Fan