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We introduce the totally asymmetric exclusion process with Langmuir kinetics (TASEP-LK) on a network as a microscopic model for active motor protein transport on the cytoskeleton, immersed in the diffusive cytoplasm. We discuss how the…

Statistical Mechanics · Physics 2013-03-01 I. Neri , N. Kern , A. Parmeggiani

Fundamental biological processes such as transcription and translation, where a genetic sequence is sequentially read by a macromolecule, have been well described by a classical model of non-equilibrium statistical physics, the totally…

Quantitative Methods · Quantitative Biology 2019-08-15 Jingkui Wang , Benjamin Pfeuty , Quentin Thommen , Carmen Romano , Marc Lefranc

The totally asymmetric simple exclusion process (TASEP) is a well studied example of far-from-equilibrium dynamics. Here, we consider a TASEP with open boundaries but impose a global constraint on the total number of particles. In other…

Statistical Mechanics · Physics 2008-07-02 D. A. Adams , B. Schmittmann , R. K. P. Zia

We extend the paradigmatic and versatile TASEP (Totally Asymmetric Simple Exclusion Process) for stochastic 1d transport to allow for two different particle species, each having specific entry and exit rates. We offer a complete mean-field…

Statistical Mechanics · Physics 2022-04-06 Pierre Bonnin , Ian Stansfield , M. Carmen Romano , Norbert Kern

The totally asymmetric simple exclusion process (TASEP) on the one-dimensional lattice with the Bernoulli \rho measure as initial conditions, 0<\rho<1, is stationary in space and time. Let N_t(j) be the number of particles which have…

Mathematical Physics · Physics 2013-02-07 Patrik L. Ferrari , Herbert Spohn

In this paper we consider the totally asymmetric simple exclusion process, with non-random initial condition having three regions of constant densities of particles. From left to right, the densities of the three regions are increasing.…

Mathematical Physics · Physics 2020-01-08 Patrik L. Ferrari , Peter Nejjar

We consider the one-dimensional totally asymmetric simple exclusion model (TASEP model) with open boundary conditions and present the analytical computations leading to the exact formula for distance clearance distribution, i.e. probability…

Cellular Automata and Lattice Gases · Physics 2018-01-08 Milan Krbalek , Pavel Hrabak

We identify the algorithm for constructing steady states of the $n$-species totally asymmetric simple exclusion process (TASEP) on $L$ site periodic chain by Ferrari and Martin with a composition of combinatorial $R$ for the quantum affine…

Mathematical Physics · Physics 2015-08-06 Atsuo Kuniba , Shouya Maruyama , Masato Okado

We explore how the interplay of finite availability, carrying capacity of particles at different parts of a spatially extended system and particle diffusion between them control the steady state currents and density profiles in a…

Statistical Mechanics · Physics 2024-12-04 Sourav Pal , Parna Roy , Abhik Basu

We develop a mean-field theory for the totally asymmetric simple exclusion process (TASEP) with open boundaries, in order to investigate the so-called dynamical transition. The latter phenomenon appears as a singularity in the relaxation…

Statistical Mechanics · Physics 2020-08-11 Davide Botto , Alessandro Pelizzola , Marco Pretti , Marco Zamparo

We theoretically study the Totally Asymmetric Exclusion Process (TASEP) with quenched jumping rates disorder and finite lifetime chain. TASEP is widely used to model the translation of messenger RNAs by Ribosomes in protein synthesis. Since…

We present a spectral study of the evolution matrix of the totally asymmetric exclusion process on a ring at half filling. The natural symmetries (translation, charge conjugation combined with reflection) predict only two fold degeneracies.…

Statistical Mechanics · Physics 2009-11-10 O. Golinelli , K. Mallick

We propose and study a one-dimensional (1D) model consisting of two lanes with open boundaries. One of the lanes executes diffusive and the other lane driven unidirectional or asymmetric exclusion dynamics, which are mutually coupled…

Statistical Mechanics · Physics 2023-11-27 Atri Goswami , Utsa Dey , Sudip Mukherjee

We study an inhomogenous multispecies version of the Totally Asymmetric Simple Exclusion Process (TASEP) on a periodic oriented one dimensional lattice, which depends on two sets of parameters $({\bf \tau},{\bf \nu})$, attached to the…

Mathematical Physics · Physics 2016-02-26 Luigi Cantini

In the totally asymmetric simple exclusion process (TASEP) two processes arise in the large time limit: the Airy_1 and Airy_2 processes. The Airy_2 process is an universal limit process occurring also in other models: in a stochastic growth…

Mathematical Physics · Physics 2008-11-01 Patrik L. Ferrari

We investigate a balance network of the asymmetric simple exclusion process (ASEP). Subsystems consisting of ASEPs are connected by bidirectional links with each other, which results in balance between every pair of subsystems. The network…

Statistical Mechanics · Physics 2013-02-18 Takahiro Ezaki , Katsuhiro Nishinari

We prove an exact solution of a multi-lane totally asymmetric simple exclusion process (TASEP) with heterogeneous lane-changing rates on a torus. The solution is given by a factorized form; that is, the TASEP in each lane and lane-changing…

Physics and Society · Physics 2015-06-23 Takahiro Ezaki , Katsuhiro Nishinari

We revisit a totally asymmetric simple exclusion process (TASEP) with open boundaries and a global constraint on the total number of particles [Adams, et. al. 2008 J. Stat. Mech. P06009]. In this model, the entry rate of particles into the…

Statistical Mechanics · Physics 2009-08-30 L. Jonathan Cook , R. K. P. Zia

Non-equilibrium steady states (NESS) of Markov processes give rise to non-trivial cyclic probability fluxes. Cycle decompositions of the steady state offer an effective description of such fluxes. Here, we present an iterative cycle…

We study asymmetric exclusion processes (TASEP) on a nonuniform one-dimensional ring consisting of two segments having unequal hopping rates, or {\em defects}. We allow weak particle nonconservation via Langmuir kinetics (LK), that are…

Statistical Mechanics · Physics 2017-01-12 Bijoy Daga , Souvik Mondal , Anjan Kumar Chandra , Tirthankar Banerjee , Abhik Basu