Related papers: Intrinsic Universality in Self-Assembly
Measurability with respect to ideals is tightly connected with absoluteness principles for certain forcing notions. We study a uniformization principle that postulates the existence of a uniformizing function on a large set, relative to a…
We give several different geometric characterizations of the situation in which the parallel set $F_\epsilon$ of a self-similar set $F$ can be described by the inner $\epsilon$-parallel set $T_{-\epsilon}$ of the associated canonical tiling…
Aperiodic tiling --- a form of complex global geometric structure arising through locally checkable, constant-time matching rules --- has long been closely tied to a wide range of physical, information-theoretic, and foundational…
We consider tiles (dimers) each of which covers two vertices of a rectangular lattice. There is a normalized translation invariant weighting on the shape of the tiles. We study the pressure, p, or entropy, (one over the volume times the…
This article proposes a universal simulation platform for simulating systems undergoing duress. In other words, this paper introduces a total simulation package which includes a number of methods of simulating the flexibility of a given…
Assembly Theory (AT) was developed to help distinguish living from non-living systems. The theory is simple as it posits that the amount of selection or Assembly is a function of the number of complex objects where their complexity can be…
In classical asynchronous distributed systems composed of a fixed number n of processes where some proportion may fail by crashing, many objects do not have a wait-free linearizable implementation (e.g. stacks, queues, etc.). It has been…
In this paper we consider uniformly random lozenge tilings of arbitrary domains approximating (after suitable normalization) a closed, simply-connected subset of $\mathbb{R}^2$ with piecewise smooth, simple boundary. We show that the local…
Understanding the complex self-assembly of biomacromolecules is a major outstanding question. Microtubules are one example of a biopolymer that possesses characteristics quite distinct from standard synthetic polymers that are derived from…
We study the universal groups of inverse semigroups associated with point sets and with tilings. We focus our attention on two classes of examples. The first class consists of point sets which are obtained by a cut and projection scheme…
This work presents a construction method for interlocking assemblies based on planar crystallographic symmetries. Planar crystallographic groups, also known as wallpaper groups, correspond to tessellations of the plane with a tile, called a…
The tolerancing process links the virtual and the real worlds. From the former, tolerances define a variational geometrical language (geometric parameters). From the latter, there are values limiting those parameters. The beginning of a…
We develop a class of models with which we simulate the assembly of particles into T1 capsid-like objects using Newtonian dynamics. By simulating assembly for many different values of system parameters, we vary the forces that drive…
Several machine learning models are defined for inputs of any size, such as graphs with different numbers of nodes and point clouds containing varying numbers of points. The universality properties of such any-dimensional models remain…
A simple deterministic and time reversal invariant type of thermostat is proposed to be used for computer simulations of classical systems. It acts on collisions with the walls of the container exclusively. It maps the incoming and outgoing…
Many remarkably robust, rapid and spontaneous self-assembly phenomena in nature can be modeled geometrically starting from a collection of rigid bunches of spheres. This paper highlights the role of symmetry in sphere-based assembly…
The simulated self-assembly of molecular building blocks into functional complexes is a key area of study in computational biology and materials science. Self-assembly simulations of proteins using physically-motivated potentials for…
Self-consistent theory of electron localization in disordered systems is generalized for the case of interacting electrons. We propose and critically compare a number of possible self-consistency schemes which take into account the lowest…
Assembly of multi-part physical structures is both a valuable end product for autonomous robotics, as well as a valuable diagnostic task for open-ended training of embodied intelligent agents. We introduce a naturalistic physics-based…
This paper introduces a simple formalism for dealing with deterministic, non- deterministic and stochastic cellular automata in an unified and composable manner. This formalism allows for local probabilistic correlations, a feature which is…