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Related papers: Bidirectional transport on a dynamic lattice

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Intracellular transport along microtubules or actin filaments, powered by molecular motors such as kinesins, dyneins or myosins, has been recently modeled using one-dimensional driven lattice gases. We discuss some generalizations of these…

Biological Physics · Physics 2007-10-09 Paolo Pierobon

We demonstrate that directed transport of particles in a two dimensional driven lattice can be dynamically reversed multiple times by superimposing additional spatially localized lattices on top of a background lattice. The timescales of…

Statistical Mechanics · Physics 2023-02-10 Aritra K. Mukhopadhyay , Peter Schmelcher

The collective dynamics of $N$ weakly coupled processive molecular motors are considered theoretically. We show, using a discrete lattice model, that the velocity-force curves strongly depend on the effective dynamic interactions between…

Subcellular Processes · Quantitative Biology 2009-11-11 O. Campas , Y. Kafri , K. B. Zeldovich , J. Casademunt , J. -F. Joanny

The transport of a steel sphere on top of two dimensional periodic magnetic patterns is studied experimentally. Transport of the sphere is achieved by moving an external permanent magnet on a closed loop around the two dimensional crystal.…

Other Condensed Matter · Physics 2017-11-16 Anna M. E. B. Rossi , Jonas Bugase , Thomas M. Fischer

We demonstrate spontaneous bidirectional motion of droplets on liquid infused surfaces in the presence of a topographical gradient, in which the droplets can move either toward the denser or the sparser solid fraction area. Our analytical…

Processive molecular motors which drive the traffic of organelles in cells move in a directed way along cytoskeletal filaments. On large time scales, they perform motor walks, i.e., peculiar random walks which arise from the repeated…

Statistical Mechanics · Physics 2007-05-23 Stefan Klumpp , Theo M. Nieuwenhuizen , Reinhard Lipowsky

Active motion of molecules along filamentous structures is a crucial feature of cell biology and is often modeled with the paradigmatic asymmetric simple exclusion process. Motivated by recent experimental studies that have addressed the…

Statistical Mechanics · Physics 2018-09-19 Patrick Wilke , Emanuel Reithmann , Erwin Frey

Cells control the size and organization of biomolecular condensates formed by liquid-liquid phase separation (LLPS), but multiple mechanisms likely contribute to this control and remain to be fully elucidated. Here we propose a…

Biological Physics · Physics 2026-04-10 Le Qiao , Peter Gispert , Lukas S. Stelzl , Friederike Schmid

We study analytically the dynamics and the micro-structural changes of a host medium caused by a driven tracer particle moving in a confined, quiescent molecular crowding environment. Imitating typical settings of active micro-rheology…

Statistical Mechanics · Physics 2016-03-17 O. Bénichou , P. Illien , G. Oshanin , A. Sarracino , R. Voituriez

Transport of intracellular cargo is often mediated by teams of molecular motors that function in a chaotic environment under varying conditions. We show that the motors have unique steady state behavior which enables transport modalities…

Subcellular Processes · Quantitative Biology 2023-09-19 Shreyas Bhaban , Rachit Srivastava , James Melbourne , Saurav Talukdar , Murti V. Salapaka

Stochasticity is a defining feature of the pairwise forces governing interactions in biological systems-from molecular motors to cell-cell adhesion-yet its consequences on large-scale dynamics remain poorly understood. Here, we show that…

Soft Condensed Matter · Physics 2025-08-27 Henry Alston , Raphael Voituriez , Thibault Bertrand

Molecular motion through pores plays a crucial role in various natural and industrial processes. One of the most fascinating features of biological channel-facilitated transport is a stochastic gating process, when the channels dynamically…

Chemical Physics · Physics 2018-12-20 Aram Davtyan , Anatoly B. Kolomeisky

Molecular motor proteins serve as an essential component of intracellular transport by generating forces to haul cargoes along cytoskeletal filaments. Two species of motors that are directed oppositely (e.g. kinesin, dynein) can be attached…

Subcellular Processes · Quantitative Biology 2017-05-10 Christopher E. Miles , James P. Keener

We consider a quantum particle in tilted two-dimensional lattices in the tight-binding approximations. We found that for some lattice geometries and certain orientations of the static force with respect to the lattice primary axes the…

Quantum Physics · Physics 2014-01-22 Evgeny N. Bulgakov , Andrey R. Kolovsky

Dynamic properties of molecular motors whose motion is powered by interactions with specific lattice bonds are studied theoretically with the help of discrete-state stochastic "burnt-bridge" models. Molecular motors are depicted as random…

Statistical Mechanics · Physics 2009-11-24 Maxim N. Artyomov , Alexander Yu. Morozov , Anatoly B. Kolomeisky

Transport of molecules across membrane channels is investigated theoretically using exactly solvable discrete stochastic site-binding models. It is shown that the interaction potential between molecules and the channel has a strong effect…

Soft Condensed Matter · Physics 2009-11-11 Anatoly B. Kolomeisky

We examine the dynamics of a single colloidal particle driven through a colloidal lattice which can distort in response to the driven particle. We find a remarkably rich variety of dynamical locking phenomena as we vary the angle of the…

Soft Condensed Matter · Physics 2009-11-10 C. Reichhardt , C. J. Olson Reichhardt

The origins of the large differences observed to the rates with which the diverse particles are conveyed along axonal microtubules are still a matter of debate in the literature. There is evidence that certain neurodegenerative diseases may…

Subcellular Processes · Quantitative Biology 2020-09-30 Alexandre Y. C. Cho , Victor R. C. M. Roque , Carla Goldman

Dusty plasma medium turns out to be an ideal system for studying the strongly coupled behavior of matter. The large size and slow response make their dynamics suitable to be captured through simple diagnostic tools. Furthermore, as the…

Plasma Physics · Physics 2024-08-30 Aman Singh Katariya , Amita Das , Animesh Sharma , Bibhuti Bhushan Sahu

We analyze quantum transport of charged fermionic particles in the tight-binding lattice connecting two particle reservoirs (the leads). If the lead chemical potentials are different they create an electric field which tilts the lattice. We…

Mesoscale and Nanoscale Physics · Physics 2026-04-15 Andrey R. Kolovsky