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When two terms occur together in a document, the probability of a close relationship between them and the document itself is greater if they are in nearby positions. However, ranking functions including term proximity (TP) require larger…

Information Retrieval · Computer Science 2016-06-24 Ju Yang , Jiancong Tong , Rebecca J. Stones , Zhaohua Zhang , Benjun Ye , Gang Wang , Xiaoguang Liu

Biomedical research yields a wealth of information, much of which is only accessible through the literature. Consequently, literature search is an essential tool for building on prior knowledge in clinical and biomedical research. Although…

Information Retrieval · Computer Science 2024-04-10 Qiao Jin , Robert Leaman , Zhiyong Lu

This article deals with the semantic Web and ontologies. It addresses the issue of the classification of multilingual Web documents, based on domain ontology. The objective is being able, using a model, to classify documents in different…

Information Retrieval · Computer Science 2012-06-22 Zakaria Elberrichi , Malika Taibi , Amel Belaggoun

We introduce a novel profile-based patient clustering model designed for clinical data in healthcare. By utilizing a method grounded on constrained low-rank approximation, our model takes advantage of patients' clinical data and digital…

Machine Learning · Computer Science 2023-08-24 Dongjin Choi , Andy Xiang , Ozgur Ozturk , Deep Shrestha , Barry Drake , Hamid Haidarian , Faizan Javed , Haesun Park

Health care professionals rely on treatment search engines to efficiently find adequate clinical trials and early access programs for their patients. However, doctors lose trust in the system if its underlying processes are unclear and…

Information Retrieval · Computer Science 2021-10-26 Edeline Contempré , Zoltán Szlávik , Majid Mohammadi , Erick Velazquez , Annette ten Teije , Ilaria Tiddi

In this report, we unify two quite distinct approaches to information retrieval: region models and language models. Region models were developed for structured document retrieval. They provide a well-defined behaviour as well as a simple…

Information Retrieval · Computer Science 2012-05-02 Djoerd Hiemstra , Vojkan Mihajlovic

This work is pertaining to the diversified ranking of web-resources and interconnected documents that rely on a network-like structure, e.g. web-pages. A practical example of this would be a query for the k most relevant web-pages that are…

Information Retrieval · Computer Science 2016-07-27 George Tsatsanifos

Document-level relation extraction (DocRE) is a task that focuses on identifying relations between entities within a document. However, existing DocRE models often overlook the correlation between relations and lack a quantitative analysis…

Information Retrieval · Computer Science 2023-10-23 Yusheng Huang , Zhouhan Lin

The terminology used in Biomedicine shows lexical peculiarities that have required the elaboration of terminological resources and information retrieval systems with specific functionalities. The main characteristics are the high rates of…

Computation and Language · Computer Science 2012-04-02 Mónica Marrero , Sonia Sánchez-Cuadrado , Julián Urbano , Jorge Morato , José-Antonio Moreiro

Medical systematic reviews typically require assessing all the documents retrieved by a search. The reason is two-fold: the task aims for ``total recall''; and documents retrieved using Boolean search are an unordered set, and thus it is…

Information Retrieval · Computer Science 2022-12-20 Shuai Wang , Harrisen Scells , Bevan Koopman , Guido Zuccon

Query expansion is a functionality of search engines that suggests a set of related queries for a user-issued keyword query. Typical corpus-driven keyword query expansion approaches return popular words in the results as expanded queries.…

Information Retrieval · Computer Science 2011-04-19 Ziyang Liu , Sivaramakrishnan Natarajan , Yi Chen

When working with a new dataset, it is important to first explore and familiarize oneself with it, before applying any advanced machine learning algorithms. However, to the best of our knowledge, no tools exist that quickly and reliably…

Computation and Language · Computer Science 2017-07-18 Franziska Horn , Leila Arras , Grégoire Montavon , Klaus-Robert Müller , Wojciech Samek

Large Language Models have undoubtedly revolutionized the Natural Language Processing field, the current trend being to promote one-model-for-all tasks (sentiment analysis, translation, etc.). However, the statistical mechanisms at work in…

Computation and Language · Computer Science 2024-08-26 Célia D'Cruz , Jean-Marc Bereder , Frédéric Precioso , Michel Riveill

Divergence from a random baseline is a technique for the evaluation of document clustering. It ensures cluster quality measures are performing work that prevents ineffective clusterings from giving high scores to clusterings that provide no…

Information Retrieval · Computer Science 2012-08-30 Christopher M. De Vries , Shlomo Geva , Andrew Trotman

A keyword search on constrained clustering on Web-of-Science returned just under 3,000 documents. We ran automatic analyses of those, and compiled our own bibliography of 183 papers which we analysed in more detail based on their topic and…

Machine Learning · Computer Science 2022-09-23 Ludmila Kuncheva , Francis Williams , Samuel Hennessey

We have developed an application that will take a "MEDLINE" output from the PubMed database and allows the user to cluster all non-trivial words of the abstracts of the PubMed output. The number of clusters to use can be selected by the…

Digital Libraries · Computer Science 2018-04-30 Ellie Small , Javier Cabrera , John B. Kostis , William Kostis

Clustering scientific publications can reveal underlying research structures within bibliographic databases. Graph-based clustering methods, such as spectral, Louvain, and Leiden algorithms, are frequently utilized due to their capacity to…

Digital Libraries · Computer Science 2025-05-27 Vu Thi Huong , Thorsten Koch

In recent years, summarizers that incorporate domain knowledge into the process of text summarization have outperformed generic methods, especially for summarization of biomedical texts. However, construction and maintenance of domain…

Computation and Language · Computer Science 2019-08-23 Milad Moradi , Matthias Samwald

Layouts and sub-layouts constitute an important clue while searching a document on the basis of its structure, or when textual content is unknown/irrelevant. A sub-layout specifies the arrangement of document entities within a smaller…

Information Retrieval · Computer Science 2016-09-12 Anukriti Bansal , Sumantra Dutta Roy , Gaurav Harit

This paper addresses the problem of classifying web documents using domain ontology. Our goal is to provide a method for improving the classification of medical documents by exploiting the MeSH thesaurus (Medical Subject Headings) which…

Information Retrieval · Computer Science 2012-07-03 Zakaria Elberrichi , Belaggoun Amel , Taibi Malika