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Non-selective effects, like genetic drift, are an important factor in modern conceptions of evolution, and have been extensively studied for constant population sizes. Here, we consider non-selective evolution in the case of growing…

Populations and Evolution · Quantitative Biology 2017-09-04 Karl Wienand , Matthias Lechner , Felix Becker , Heinrich Jung , Erwin Frey

Pattern forming systems allow for a wealth of states, where wavelengths and orientation of patterns varies and defects disrupt patches of monocrystalline regions. Growth of patterns has long been recognized as a strong selection mechanism.…

Pattern Formation and Solitons · Physics 2023-02-28 Ryan Goh , Arnd Scheel

Sexual reproduction presents significant challenges to formal treatment of evolutionary processes. A starting point for systematic treatments of ecological and evolutionary phenomena has been provided by the gene centered view of evolution…

Biological Physics · Physics 2009-11-06 Hiroki Sayama , Les Kaufman , Yaneer Bar-Yam

Risk spreading in bacterial populations is generally regarded as a strategy to maximize survival. Here, we study its role during range expansion of a genetically diverse population where growth and motility are two alternative traits. We…

Populations and Evolution · Quantitative Biology 2014-08-26 Matthias Reiter , Steffen Rulands , Erwin Frey

Genetic drift is stochastic fluctuations of alleles frequencies in a population due to sampling effects. We consider a model of drift in an equilibrium population, with high mutation rates: few functional mutations per generation. Such…

Populations and Evolution · Quantitative Biology 2017-01-12 Alexey A. Shadrin , Dmitri V. Parkhomchuk

The phenomenon of spatial clustering induced by death and reproduction in a population of anomalously diffusing individuals is studied analytically. The possibility of social behaviors affecting the migration strategies has been taken into…

Populations and Evolution · Quantitative Biology 2015-05-30 Piero Olla

We consider the general character of the spatial distribution of a population that grows through reproduction and subsequent local resettlement of new population members. We present several simple one and two-dimensional point placement…

Pattern Formation and Solitons · Physics 2013-05-29 Jonathan Ozik , Brian R. Hunt , Edward Ott

Most organisms grow in space, whether they are viruses spreading within a host tissue or invasive species colonizing a new continent. Evolution typically selects for higher expansion rates during spatial growth, but it has been suggested…

Populations and Evolution · Quantitative Biology 2022-05-18 Hyunseok Lee , Jeff Gore , Kirill S. Korolev

Natural selection and random drift are competing phenomena for explaining the evolution of populations. Combining a highly fit mutant with a population structure that improves the odds that the mutant spreads through the whole population…

Populations and Evolution · Quantitative Biology 2009-08-14 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

Theoretical understanding of evolutionary dynamics in spatially structured populations often relies on non-spatial models. Biofilms are among such populations where a more accurate understanding is of theoretical interest and can reveal new…

Biological Physics · Physics 2021-05-26 Youness Azimzade , Abbas Ali Saberi

Environmental changes greatly influence the evolution of populations. Here, we study the dynamics of a population of two strains, one growing slightly faster than the other, competing for resources in a time-varying binary environment…

Populations and Evolution · Quantitative Biology 2020-07-28 Ami Taitelbaum , Robert West , Michael Assaf , Mauro Mobilia

This note is motivated by the article by F. Lutscher, E. Pachepsky, and M. Lewis (2005), The Effect of Dispersal Patterns on Stream Populations SIAM Rev. Vol. 47 No. 4 pp. 749-772 on the drift paradox. We consider the case of a regime…

Probability · Mathematics 2013-04-05 William Felder , Edward C. Waymire

We introduce a theory of sequential causal inference in which learners in a chain estimate a structural model from their upstream teacher and then pass samples from the model to their downstream student. It extends the population dynamics…

Populations and Evolution · Quantitative Biology 2012-02-28 James P. Crutchfield , Sean Whalen

We obtain the Brownian net of Sun and Swart (2008) as the scaling limit of the paths traced out by a system of continuous (one-dimensional) space and time branching and coalescing random walks. This demonstrates a certain universality of…

Probability · Mathematics 2016-11-17 Alison Etheridge , Nic Freeman , Daniel Straulino

Spatial models where growth is limited to the edge of the expansions have been instrumental to understand the population dynamics and the clone size distribution in growing cellular populations, such as microbial colonies and avascular…

Populations and Evolution · Quantitative Biology 2022-06-08 Armin Eghdami , Jayson Paulose , Diana Fusco

Drifting models train one-step generators by optimizing a kernel-induced mean-shift discrepancy between the data and model distributions, with Laplace kernels used by default in practice. At each point, this discrepancy compares the…

Machine Learning · Computer Science 2026-05-18 Chieh-Hsin Lai , Bac Nguyen , Naoki Murata , Yuhta Takida , Toshimitsu Uesaka , Yuki Mitsufuji , Stefano Ermon , Molei Tao

We study a universal object for the genealogy of a sample in populations with mutations: the critical birth-death process with Poissonian mutations, conditioned on its population size at a fixed time horizon. We show how this process arises…

Probability · Mathematics 2014-07-30 G. Achaz , C. Delaporte , A. Lambert

Understanding the processes that give rise to quantitative measurements associated with molecular sequence data remains an important issue in statistical phylogenetics. Examples of such measurements include geographic coordinates in the…

Populations and Evolution · Quantitative Biology 2015-12-31 Mandev S. Gill , Lam Si Tung Ho , Guy Baele , Philippe Lemey , Marc A. Suchard

Consider the following mechanism for the random evolution of a distribution of mass on the integer lattice ${\mathbf{Z}}$. At unit rate, independently for each site, the mass at the site is split into two parts by choosing a random…

Probability · Mathematics 2009-09-01 Chris Howitt , Jon Warren

We review and extend results for mutation, selection, genetic drift, and migration in a one-dimensional continuous population. The population is described by a continuous limit of the stepping stone model, which leads to the stochastic…

Populations and Evolution · Quantitative Biology 2011-04-14 K. S. Korolev , Mikkel Avlund , Oskar Hallatschek , David R. Nelson