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The spatial localization or sequestering of motile cargo and their dispersal within cells is an important process in a number of physiological contexts. The morphology of the cytoskeletal network, along which active, motor-driven…

Biological Physics · Physics 2019-07-16 Bryan Maelfeyt , Ajay Gopinathan

Bacterial chemotaxis is controlled by the signalling of a cluster of receptors. A cooperative model is presented, in which coupling between neighbouring receptor dimers enhances the sensitivity with which stimuli can be detected, without…

Biological Physics · Physics 2009-10-31 Yu Shi , Thomas Duke

Cell fate determination, the process through which cells commit to differentiated states is commonly mediated by gene regulatory motifs with mutually exclusive expression states. The classical deterministic picture for cell fate…

Molecular Networks · Quantitative Biology 2019-10-09 Manuel Pájaro , Irene Otero-Muras , Carlos Vázquez , Antonio A. Alonso

The dielectric behavior of a linear cluster of two or more living cells connected by tight junctions is analyzed using a spectral method. The polarizability of this system is obtained as an expansion over the eigenmodes of the linear…

Biological Physics · Physics 2010-02-12 Titus Sandu , Daniel Vrinceanu , Eugen Gheorghiu

The proper functioning of multicellular organisms requires the robust establishment of precise proportions between distinct cell-types. This developmental differentiation process typically involves intracellular regulatory and stochastic…

Cell Behavior · Quantitative Biology 2016-06-22 Benjamin Pfeuty , Kunihiko Kaneko

Understanding the insulin signaling cascade provides insights on the underlying mechanisms of biological phenomena such as insulin resistance, diabetes, Alzheimer's disease, and cancer. For this reason, previous studies utilized chemical…

Molecular Networks · Quantitative Biology 2024-05-20 Patrick Vincent N. Lubenia , Eduardo R. Mendoza , Angelyn R. Lao

Input feed-forward output feedback passive (IF-OFP) systems define a great number of dynamical systems. In this report, we show that dissipativity and passivity-based control combined with event-triggered networked control systems (NCS)…

Optimization and Control · Mathematics 2016-07-05 Arash Rahnama , Meng Xia , Panos J. Antsaklis

Sepsis, a life-threatening condition triggered by the body's exaggerated response to infection, demands urgent intervention to prevent severe complications. Existing machine learning methods for managing sepsis struggle in offline…

Machine Learning · Computer Science 2024-03-13 Dipesh Tamboli , Jiayu Chen , Kiran Pranesh Jotheeswaran , Denny Yu , Vaneet Aggarwal

Variability in the tumorigenic potential among cancer cells within a tumor population is an unresolved fundamental issue in cancer biology. It is important to know whether cancer cells with higher tumorigenic potential, such as cancer stem…

Molecular Networks · Quantitative Biology 2011-11-30 Subhadip Raychaudhuri

A feedback mechanism that involves the proteins p53 and mdm2, induces cell death as a controled response to severe DNA damage. A minimal model for this mechanism demonstrates that the respone may be dynamic and connected with the time…

Disordered Systems and Neural Networks · Physics 2009-11-07 G. Tiana , M. H. Jensen , K. Sneppen

Density dependence is important in the ecology and evolution of microbial and cancer cells. Typically, we can only measure net growth rates, but the underlying density-dependent mechanisms that give rise to the observed dynamics can…

Populations and Evolution · Quantitative Biology 2025-06-04 Linh Huynh , Jacob G. Scott , Peter J. Thomas

We derive a new fluctuation-dissipation relation for non-equilibrium systems with long-term memory. We show how this relation allows one to access new experimental information regarding active forces in living cells that cannot otherwise be…

Soft Condensed Matter · Physics 2013-06-25 Pierre Bohec , François Gallet , Christian Maes , Soghra Safaverdi , Paolo Visco , Frédéric Van Wijland

Structure formation and constant reorganization of the actin cytoskeleton are key requirements for the function of living cells. Here we show that a minimal reconstituted system consisting of actin filaments, crosslinking molecules and…

Biological Physics · Physics 2015-05-27 Simone Köhler , Volker Schaller , Andreas R. Bausch

Many cell types exhibit oscillatory activity, such as repetitive action potential firing due to the Hodgkin-Huxley dynamics of ion channels in the cell membrane or reveal intracellular inositol triphosphate (IP$_3$) mediated calcium…

Cell Behavior · Quantitative Biology 2015-06-26 J. M. A. M. Kusters , J. M. Cortes , W. P. M. van Meerwijk , D. L. Ypey , A. P. R. Theuvenet , C. C. A. M. Gielen

To survive starvation, the bacterium Bacillus subtilis forms durable spores. The initial step of sporulation is asymmetric cell division, leading to a large mother-cell and a small forespore compartment. After division is completed and the…

Cell Behavior · Quantitative Biology 2015-06-23 Nikola Ojkic , Javier López-Garrido , Kit Pogliano , Robert G. Endres

Active transport of biomolecular condensates and cell migration in collectives are fundamental to development, homeostasis, and processes such as cancer progression, wound healing, and infection response. Yet how these assemblies are…

Soft Condensed Matter · Physics 2025-10-24 Hossein Vahid , Jens-Uwe Sommer , Abhinav Sharma

Load balancing between adjacent base stations (BSs) is important for balancing load distributions and improving service provisioning. Whilst load balancing between any given pair of BSs is beneficial, cascade load sharing can cause network…

Networking and Internet Architecture · Computer Science 2019-02-27 Giannis Moutsinas , Weisi Guo

We study a stochastic two-species chemical reaction system with two mechanisms. One mechanism consists of chemical interactions which govern the overall drift of species amounts in the system; the other mechanism consists of resampling,…

Probability · Mathematics 2014-05-06 John K. McSweeney , Lea Popovic

Multistationarity in biological systems is a mechanism of cellular decision making. In particular, signaling pathways regulated by protein phosphorylation display features that facilitate a variety of responses to different biological…

Subcellular Processes · Quantitative Biology 2011-07-05 Elisenda Feliu , Carsten Wiuf

Using a pair of coupled LRC cavities we experimentally demonstrate that instabilities and amplification action can be tamed by a spatially inhomogenous gain. Specifically we observe the counter-intuitive phenomenon of stabilization of the…

Optics · Physics 2013-09-17 M. Chitsazi , S. Factor , J. Schindler , H. Ramezani , F. M. Ellis , T. Kottos