Related papers: Loops in canonical RNA pseudoknot structures
Enumerative studies of RNA secondary structures were initiated four decades ago by Waterman and his coworkers. Since then, RNA secondary structures have been explored according to many different structural characteristics, for instance,…
We study a family of scale-invariant $p$-densities of knot types in $R^3$, defined as the ratio of length to an $L^p$-type spread of pairwise distances along a curve. The first point of the paper is that the unconstrained theory has a…
We study the asymptotic distributions of the spiked eigenvalues and the largest nonspiked eigenvalue of the sample covariance matrix under a general covariance matrix model with divergent spiked eigenvalues, while the other eigenvalues are…
This article displays a proof of concept of the mixed analytical/numerical method, presented in previous publications, to compute two-loop functions with up to five massive propagators in a scalar theory having three- and four-leg vertices…
Mechanical unfolding of RNA structures, ranging from hairpins to ribozymes, using laser optical tweezer (LOT) experiments have begun to reveal the features of the energy landscape that cannot be easily explored using conventional…
We investigate the production of spin-3/2 hadrons in semi-inclusive deep inelastic lepton-nucleon scatterings. The complete differential cross section is derived through the kinematic analysis and expressed in terms of 288 structure…
In this work, we propose a nonlinear stochastic model of a network of stochastic spiking neurons. We heuristically derive the mean-field limit of this system. We then design a Monte Carlo method for the simulation of the microscopic system,…
We compute the logarithmic asymptotics of the non-existence probability (and more generally the lower-tail probability) for a wide variety of combinatorial problems for a range of parameters in the `critical regime' between the regime…
Bessel processes $(X_{t,k})_{t\ge0}$ in $N$ dimensions are classified via associated root systems and multiplicity constants $k\ge0$. They describe interacting Calogero-Moser-Suther\-land particle systems with $N$ particles and are related…
The general limit distributions of the sum of random variables described by a finite matrix product ansatz are characterized. Using a mapping to a Hidden Markov Chain formalism, non-standard limit distributions are obtained, and related to…
RNA design shows growing applications in synthetic biology and therapeutics, driven by the crucial role of RNA in various biological processes. A fundamental challenge is to find functional RNA sequences that satisfy given structural…
In a previous paper, the authors developed a method for computing normal forms of dynamical systems with a coupled cell network structure. We now apply this theory to one-parameter families of homogeneous feed-forward chains with…
Loops are subgraphs responsible for the multiplicity of paths going from one to another generic node in a given network. In this paper we present an analytic approach for the evaluation of the average number of loops in random scale-free…
We study the distribution of finite size pseudo-critical points in a one-dimensional random quantum magnet with a quantum phase transition described by an infinite randomness fixed point. Pseudo-critical points are defined in three…
We study the mean-field limit of a model of biological neuron networks based on the so-called stochastic integrate-and-fire (IF) dynamics. Our approach allows to derive a continuous limit for the macroscopic behavior of the system, the…
We study the growth and saturation of Krylov spread (K-) complexity under random quantum circuits. In Haar-random unitary evolution, we show that, for large system sizes, K-complexity grows linearly before saturating at a late-time value of…
We calculate inclusive hadron productions in pA collisions in the small-x saturation formalism at one-loop order. The differential cross section is written into a factorization form in the coordinate space at the next-to-leading order,…
We study RNA foldings and investigate their topology using a combination of knot theory and embedded rigid vertex graphs. Knot theory has been helpful in modeling biomolecules, but classical knots place emphasis on a biomolecule's…
We study random compositions of transformations having certain uniform fiberwise properties and prove bounds which in combination with other results yield a quenched central limit theorem equipped with a convergence rate, also in the…
We present a relativistic procedure for the chiral expansion of the two-pion exchange component of the $NN$ potential, which emphasizes the role of intermediate $\pi N$ subamplitudes. The relationship between power counting in $\pi N$ and…