Related papers: Hardness Results for the Gapped Consecutive-Ones P…
Many natural combinatorial problems can be expressed as constraint satisfaction problems. This class of problems is known to be NP-complete in general, but certain restrictions on the form of the constraints can ensure tractability. The…
In this paper we show that the following problem is NP-complete: Given an alphabet $\Sigma$ and two strings over $\Sigma$, the question is whether there exists a permutation of $\Sigma$ which is a subsequence of both of the given strings.
Constraint Satisfaction Problems (CSP) constitute a convenient way to capture many combinatorial problems. The general CSP is known to be NP-complete, but its complexity depends on a template, usually a set of relations, upon which they are…
The Consecutive Ones Property is an important notion for binary matrices, both from a theoretical and applied point of view. Tucker gave in 1972 a characterization of matrices that do not satisfy the Consecutive Ones Property in terms of…
The order preserving pattern matching (OPPM) problem is, given a pattern string $p$ and a text string $t$, find all substrings of $t$ which have the same relative orders as $p$. In this paper, we consider two variants of the OPPM problem…
We introduce and study a novel generalization of the classical Knapsack Problem (KP), called the Colored Knapsack Problem (CKP). In this problem, the items are partitioned into classes of colors and the packed items need to be ordered such…
We apply the techniques developed by Marcus, Spielman and Srivastava, working with principal submatrices in place of rank $1$ decompositions to give an alternate proof of their results on restricted invertibility. We show that one can find…
The NP-complete Permutation Pattern Matching problem asks whether a permutation P (the pattern) can be matched into a permutation T (the text). A matching is an order-preserving embedding of P into T. In the Generalized Permutation Pattern…
We consider two basic algorithmic problems concerning tuples of (skew-)symmetric matrices. The first problem asks to decide, given two tuples of (skew-)symmetric matrices $(B_1, \dots, B_m)$ and $(C_1, \dots, C_m)$, whether there exists an…
We systematically study the computational complexity of a broad class of computational problems in phylogenetic reconstruction. The class contains for example the rooted triple consistency problem, forbidden subtree problems, the quartet…
We study the computational complexity of fundamental problems over the $p$-adic numbers ${\mathbb Q}_p$ and the $p$-adic integers ${\mathbb Z}_p$. Gu\'epin, Haase, and Worrell proved that checking satisfiability of systems of linear…
We describe two BQP-complete problems concerning properties of sparse graphs having a certain symmetry. The graphs are specified by efficiently computable functions which output the adjacent vertices for each vertex. Let i and j be two…
For a finite relational structure A, let CSP(A) denote the CSP instances whose constraint relations are taken from A. The resulting family of problems CSP(A) has been considered heavily in a variety of computational contexts. In this…
We investigate the parameterized complexity of finding subgraphs with hereditary properties on graphs belonging to a hereditary graph class. Given a graph $G$, a non-trivial hereditary property $\Pi$ and an integer parameter $k$, the…
An uniform LP duality is an useful property of conic matrix systems. A consistent linear conic optimization problem yields uniform LP duality if for any linear cost function, for which the primal problem has finite optimal value, the…
The Fewest Clues Problem (FCP) framework has been introduced to study the complexity of determining whether a solution to an \NP~problem can be uniquely identified by specifying a subset of the certificate. For a given problem $P \in \NP$,…
Letting $\delta_1(n,m)$ be the density of the set of integers with exactly one divisor in $(n,m)$, Erd\H{o}s wondered if $\delta_1(n,m)$ is unimodular for fixed $n$. We prove this is false in general, as the sequence $(\delta_1(n,m))$ has…
Reconciling gene trees with a species tree is a fundamental problem to understand the evolution of gene families. Many existing approaches reconcile each gene tree independently. However, it is well-known that the evolution of gene families…
Let \(d_k(p)\) denote the natural density of positive integers whose \(k\)-th smallest prime divisor is \(p\). Erd\H{o}s asked whether, for each fixed \(k\), the sequence \(p\mapsto d_k(p)\) is unimodal as \(p\) ranges over the primes.…
We show that the metaproblem for coset-generating polymorphisms is NP-complete, answering a question of Chen and Larose: given a finite structure, the computational question is whether this structure has a polymorphism of the form $(x,y,z)…