Related papers: Proceedings Third Workshop on Membrane Computing a…
Genome-scale stoichiometric modeling of metabolism has become a standard systems biology tool for modeling cellular physiology and growth. Extensions of this approach are also emerging as a valuable avenue for predicting, understanding and…
In silico, cell based approaches for modeling biological morphogenesis are used to test and validate our understanding of the biological and mechanical process that are at work during the growth and the organization of multi-cell tissues.…
This volume contains the proceedings of the 12th International Workshop on Quantum Physics and Logic (QPL 2015), which was held July 15-17, 2015 at Oxford University. The goal of this workshop series is to bring together researchers working…
In multicellular organisms, cells coordinate their activities through cell-cell communication (CCC), which is crucial for development, tissue homeostasis, and disease progression. Recent advances in single-cell and spatial omics…
Artificial neural networks and computational neuroscience models have made tremendous progress, allowing computers to achieve impressive results in artificial intelligence (AI) applications, such as image recognition, natural language…
Recent advances in electron microscopy have enabled the imaging of single cells in 3D at nanometer length scale resolutions. An uncharted frontier for in silico biology is the ability to simulate cellular processes using these observed…
The interest on autonomous systems is increasing both in industry and academia. Such systems must operate with limited human intervention in a changing environment and must be able to compensate for significant system failures without…
The conceptual background for a detailed study of the urban form of the city of Bologna is discussed with a view to modern methodological insight as it is being presented by recent results of complexity theory and the theory of…
Model biomembrane systems play a crucial role in advancing biomedical research by providing simplified yet effective platforms for exploring complex biological mechanisms. These systems span a wide range of scales, from…
This volume contains the proceedings of PLACES 2025, the 16th edition of the Workshop on Programming Language Approaches to Concurrency and Communication-cEntric Software. The workshop is scheduled to take place in Hamilton, Canada, on May…
This volume contains the proceedings of the Combined 24th International Workshop on Expressiveness in Concurrency and the 14th Workshop on Structural Operational Semantics (EXPRESS/SOS 2017) which was held on 04 September 2017 in Berlin,…
We propose PALPS, a Process Algebra with Locations for Population Systems. PALPS allows us to produce spatially-explicit, individual-based models and to reason about their behavior. Our calculus has two levels: at the first level we may…
In living systems, we often see the emergence of the ingredients necessary for computation -- the capacity for information transmission, storage, and modification -- begging the question of how we may exploit or imitate such biological…
Action languages have emerged as an important field of Knowledge Representation for reasoning about change and causality in dynamic domains. This article presents Cerbere, a production system designed to perform online causal, temporal and…
Integrative biological simulations have a varied and controversial history in the biological sciences. From computational models of organelles, cells, and simple organisms, to physiological models of tissues, organ systems, and ecosystems,…
This paper describes a new entropy-style of equation that may be useful in a general sense, but can be applied to a cognitive model with related processes. The model is based on the human brain, with automatic and distributed pattern…
The membrane curvature of cells and intracellular compartments continuously adapts to enable cells to perform vital functions, from cell division to signal trafficking. Understanding how membrane geometry affects these processes in vivo is…
Using bioimaging technology, biologists have attempted to identify and document analytical interpretations that underlie biological phenomena in biological cells. Theoretical biology aims at distilling those interpretations into knowledge…
This volume contains the proceedings of the Combined 20th International Workshop on Expressiveness in Concurrency and the 10th Workshop on Structural Operational Semantics (EXPRESS/SOS 2013) which was held on 26th August, 2013 in Buenos…
The living cell expends energetic and material resources to reliably process information from its environment. To do so, it utilises unreliable molecular circuitry that is subject to thermal and other fluctuations. Here, we argue that…