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Clustering high-dimensional data is a critical challenge in machine learning due to the curse of dimensionality and the presence of noise. Traditional clustering algorithms often fail to capture the intrinsic structures in such data. This…
Native protein folds often have a high degree of symmetry. We study the relationship between the symmetries of native proteins, and their designabilities -- how many different sequences encode a given native structure. Using a…
Encoding data as a set of unordered strings is receiving great attention as it captures one of the basic features of DNA storage systems. However, the challenge of constructing optimal redundancy codes for this channel remained elusive. In…
Cyclic codes are an interesting type of linear codes and have applications in communication and storage systems due to their efficient encoding and decoding algorithms. They have been studied for decades and a lot of progress has been made.…
Sequential lateration is a class of methods for multidimensional scaling where a suitable subset of nodes is first embedded by some method, e.g., a clique embedded by classical scaling, and then the remaining nodes are recursively embedded…
A storage code is an assignment of symbols to the vertices of a connected graph $G(V,E)$ with the property that the value of each vertex is a function of the values of its neighbors, or more generally, of a certain neighborhood of the…
A subspace code is defined as a collection of subspaces of an ambient vector space, where each information-encoding codeword is a subspace. This paper studies a class of spatial sensing problems, notably direction of arrival (DoA)…
In real-world, many problems can be formulated as the alignment between two geometric patterns. Previously, a great amount of research focus on the alignment of 2D or 3D patterns, especially in the field of computer vision. Recently, the…
Lattices and partially ordered sets have played an increasingly important role in coding theory, providing combinatorial frameworks for studying structural and algebraic properties of error-correcting codes. Motivated by recent works…
A hierarchical scheme for clustering data is presented which applies to spaces with a high number of dimension ($N_{_{D}}>3$). The data set is first reduced to a smaller set of partitions (multi-dimensional bins). Multiple clustering…
Let $S$ be a set of arbitrary objects, and let $s\mapsto s'$ be a permutation of $S$ such that $s"=(s')'=s$ and $s'\neq s$. Let $S^d=\{v_1...v_d\colon v_i\in S\}$. Two words $v,w\in S^d$ are dichotomous if $v_i=w'_i$ for some $i\in [d]$,…
Sparse coding (SC) is an automatic feature extraction and selection technique that is widely used in unsupervised learning. However, conventional SC vectorizes the input images, which breaks apart the local proximity of pixels and destructs…
The complete set of solutions of two dimensional classical string theory are constructed for any curved spacetime. They describe folded strings moving in curved spacetime. Surprizing stringy behavior becomes evident at singularities such as…
A circulant-based spatially-coupled (SC) code is constructed by partitioning the circulants of an underlying block code into a number of components, and then coupling copies of these components together. By connecting (coupling) several SC…
Based on a newly proposed spatial data model - spatial chromatic model (SCM), we developed a spatial coding scheme, called full-coded ordinary arranged chromatic diagram (full-OACD). Full-OACD is a type of spatial tessellation, where space…
Voids exist in proteins as packing defects and are often associated with protein functions. We study the statistical geometry of voids in two-dimensional lattice chain polymers. We define voids as topological features and develop a simple…
Let $S$ be a set of arbitrary objects, and let $S^d=\{v_1...v_d\colon v_i\in S\}$. A polybox code is a set $V\subset S^d$ with the property that for every two words $v,w\in V$ there is $i\in [d]$ with $v_i'=w_i$, where a permutation…
The concept of well-rounded lattices has recently found important applications in the setting of a fading single-input single-output (SISO) wiretap channel. It has been shown that, under this setup, the property of being well-rounded is…
This paper addresses the problem of exponentially increasing sub-packetization with the number of users in a centralized coded caching system by introducing a new coded caching scheme inspired by the symmetric neighboring consecutive side…
A barcode is a finite multiset of intervals on the real line. Jaramillo-Rodriguez (2023) previously defined a map from the space of barcodes with a fixed number of bars to a set of multipermutations, which presented new combinatorial…