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Lateral inhibition resulting from a double-negative feedback loop underlies the assignment of different fates to cells in many developmental processes. Previous studies have shown that the presence of time delays in models of lateral…

Cell Behavior · Quantitative Biology 2015-05-13 Hiroshi Momiji , Nicholas A. M. Monk

According to the chemical reaction network theory, the topology of a certain class of chemical reaction networks, regardless of the kinetic details, sets a limit on the dynamical properties that a particular network can potentially admit;…

Molecular Networks · Quantitative Biology 2014-08-21 Jaewook Joo , Sanjeev Chauhan

Engineering genetic networks to be both predictable and robust is a key challenge in synthetic biology. Synthetic circuits must reliably function in dynamic, stochastic and heterogeneous environments, and simple circuits can be studied to…

Quantitative Methods · Quantitative Biology 2015-06-30 Zach Hensel , Tatiana T. Marquez-Lago

We consider the stability and performance of a discrete-time control loop used as a dynamic nuller in the presence of a relatively large time delay in its feedback path. Controllers of this form occur in mm-wave telescopes using…

Instrumentation and Methods for Astrophysics · Physics 2022-07-26 Graeme Smecher , Tijmen de Haan , Matt Dobbs , Joshua Montgomery

New interactions of neutrinos can stop them from free streaming even after the weak interaction freeze-out. This results in a phase shift in the cosmic microwave background (CMB) acoustic peaks which can alleviate the Hubble tension. In…

High Energy Physics - Phenomenology · Physics 2021-01-12 Subhajit Ghosh , Rishi Khatri , Tuhin S. Roy

Exploring controllable interactions lies at the heart of quantum science. Neutral Rydberg atoms provide a versatile route toward flexible interactions between single quanta. Previous efforts mainly focused on the excitation…

Quantum Physics · Physics 2021-02-02 Xiao-Feng Shi

We have studied theoretically the basic operation of a quantum feedback loop designed to maintain the desired phase of quantum coherent oscillations in a two-level system. Such feedback can suppress the dephasing of oscillations due to…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 Rusko Ruskov , Alexander N. Korotkov

Oscillations of the transcription factor NF-kappa B have been observed experimentally both for cell populations by Hoffmann et al. (2002) and for single cells by Nelson et al. (2004). The latter experiments show significant cell-to-cell…

Quantitative Methods · Quantitative Biology 2007-05-23 F. Hayot , C. Jayaprakash

The nonlinear capacitance in doped nanotube junctions is calculated self consistently. It decreases as a function of the applied bias when the latter becomes larger than the pseudogap of the nanotube. For this device, one can deduce a…

Materials Science · Physics 2007-05-23 Keivan Esfarjani , Amir A. Farajian , Siu Tat Chui , Yoshiyuki Kawazoe

Feedback in compound quantum systems is effected by using the output from one sub-system (``the system'') to control the evolution of a second sub-system (``the ancilla'') which is reversibly coupled to the system. In the limit where the…

Quantum Physics · Physics 2009-11-06 P. Warszawski , H. M. Wiseman

We propose an experiment on quantum feedback control of a solid-state qubit, which is almost within the reach of the present-day technology. Similar to the earlier proposal, the feedback loop is used to maintain the coherent (Rabi)…

Mesoscale and Nanoscale Physics · Physics 2009-11-10 Alexander N. Korotkov

We propose a scheme of stabilizing the persistent-current Rabi oscillation based on the flux qubit-resonator-atom hybrid structure. The LC resonator weakly interacts with the flux qubit and maps the persistent-current Rabi oscillation onto…

Atomic Physics · Physics 2018-05-15 Deshui Yu , Rainer Dumke

Feedback loops in a dynamic network play an important role in determining the dynamics of that network. Through a computational study, in this paper we show that networks with fewer independent negative feedback loops tend to exhibit more…

Quantitative Methods · Quantitative Biology 2009-11-13 Eduardo Sontag , Alan Veliz-Cuba , Reinhard Laubenbacher , Abdul Salam Jarrah

Fast magnetic fluctuations due to thermal torques have useful technological functionality ranging from cryptography to probabilistic computing. The characteristic time of fluctuations in typical uniaxial anisotropy magnets studied so far is…

Mesoscale and Nanoscale Physics · Physics 2019-12-04 Jan Kaiser , Avinash Rustagi , Kerem Y. Camsari , Jonathan Z. Sun , Supriyo Datta , Pramey Upadhyaya

Networks of excitable nodes have recently attracted much attention particularly in regards to neuronal dynamics, where criticality has been argued to be a fundamental property. Refractory behavior, which limits the excitability of neurons…

Disordered Systems and Neural Networks · Physics 2018-10-22 S. Amin Moosavi , Afshin Montakhab , Alireza Valizadeh

Bistability is ubiquitous in biological systems. For example, bistability is found in many reaction networks that involve the control and execution of important biological functions, such as signalling processes. Positive feedback loops,…

Molecular Networks · Quantitative Biology 2014-10-29 Elisenda Feliu , Carsten Wiuf

A quantum-feedback-based scheme is proposed for generating multipartite entanglements of Rydberg atoms in a dissipative optical cavity. The Rydberg blockade mechanism efficiently prevents double excitations of the system, which is further…

Quantum Physics · Physics 2017-02-15 X. Q. Shao , J. H. WU , X. X. Yi

The molecular network in an organism consists of transcription/translation regulation, protein-protein interactions/modifications and a metabolic network, together forming a system that allows the cell to respond sensibly to the multiple…

Molecular Networks · Quantitative Biology 2007-05-23 Sandeep Krishna , Anna M. C. Andersson , Szabolcs Semsey , Kim Sneppen

Multiple interlinked positive feedback loops shape the stimulus responses of various biochemical systems, such as the cell cycle or intracellular calcium release. Recent studies with simplified models have identified two advantages of…

Molecular Networks · Quantitative Biology 2012-08-31 Paul Smolen , Douglas A. Baxter , John H. Byrne

The antithetic integral feedback motif recently introduced in Briat, Gupta & Khammash (Cell Systems, 2017) is known to ensure robust perfect adaptation for the mean dynamics of a given molecular species involved in a complex stochastic…

Optimization and Control · Mathematics 2017-11-23 Corentin Briat , Ankit Gupta , Mustafa Khammash