Related papers: Tube Width Fluctuations in F-Actin Solutions
Mutual uncrossability of polymers generates topological constraints on their conformations and dynamics, which are generally described using the tube model. We imaged confinement tubes for individual polymers within a F-actin solution by…
The tube-like cages of stiff polymers in entangled solutions have been shown to exhibit characteristic spatial heterogeneities. We explain these observations by a systematic theory generalizing previous work by D. Morse (Phys. Rev. E…
We investigate the nonequilibrium tube length fluctuations during the relaxation of an initially stretched, entangled polymer chain. The time-dependent variance $\sigma^2$ of the tube length follows in the early-time regime a simple…
We investigate the width of the flux tube between heavy static quark charges. Using the gauge/gravity duality, we find the properties of the minimal connected surface related to the width of the bound state. We show that in the confining…
We investigate the local fluctuations of filamentous actin (F-actin), with focus on the skeletal thin filament, using single-particle optical trapping interferometry. This experimental technique allows us to detect the Brownian motion of a…
We propose a nonlinear extension of the standard tube model for semidilute solutions of freely-sliding semiflexible polymers. Non-affine filament deformations at the entanglement scale, the renormalisation of direct interactions by thermal…
We study the squared width and the profile of flux tubes in compact U(1) lattice gauge theory in three spacetime dimensions. The results obtained from numerical calculations in the dual formulation of this confining theory are compared with…
We construct, within the framework of classical statistical mechanics, a mean field theory of dilute flux line liquids which goes beyond linear hydrodynamics. Within our approach, we find that interactions between vortices produce a massive…
Brownian dynamics simulations are used to study highly entangled solutions of semiflexible polymers. Bending fluctuations of semiflexible rods are signficantly affected by entanglement only above a concentration $c^{**}$, where $c^{**}\sim…
We develop a scaling theory to describe dynamic fluctuations of a semiflexible polymer and find several distinct regimes. We performed simulations to characterize the longitudinal and transverse dynamics; using ensemble averaging for a…
Actin is a filamentary protein which has many remarkable properties making it an ideal system for the study of the dynamics and mechanics of semi-flexible polymer solutions and gels; actin has a persistence length of over 10 microns and can…
We provide a detailed introduction to a method we recently proposed for calculating the spectrum of excitations of effective strings such as QCD flux tubes. The method relies on the approximate integrability of the low energy effective…
We image semi-flexible polymer networks under shear at the micrometer scale. By tracking embedded probe particles, we determine the local strain field, and directly measure its uniformity, or degree of affineness, on scales of 2-100 micron.…
We review some universal features of the colour flux tube of gauge theories in the confining phase predicted by the infrared conformal limit of the underlying string theory. In particular we discuss shape effects in Wilson loops and…
We present a theory for the three-dimensional evolution of tubes with expandable walls conveying fluid. Our theory can accommodate arbitrary deformations of the tube, arbitrary elasticity of the walls, and both compressible and…
Thermally excited capillary waves at fluid interfaces in binary liquid mixtures exhibit simultaneously both density and composition fluctuations. Based on a density functional theory for inhomogeneous binary liquid mixtures we derive an…
Polymerization of actin proteins into dynamic structures is essential to eukaryotic cell life. This has motivated a large body of in vitro experiments measuring polymerization kinetics of individual filaments. Here we model these kinetics,…
Twist stiffness and an asymmetric bending stiffness of a polymer or a polymer bundle is captured by the elastic ribbon model. We investigate the effects a ring geometry induces to a thermally fluctuating ribbon, finding bend-bend coupling…
Diffusion properties of a self-avoiding polymer embedded in regularly distributed obstacles with spacing a=20 and confined in two dimensions is studied numerically using the extended bond fluctuation method which we have developed recently.…
The optimal fluctuation approach is applied to study the most distant (non-universal) tails of the free-energy distribution function P(F) for an elastic string (of a large but finite length L) interacting with a quenched random potential. A…