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Recent microscopy imaging techniques allow to precisely analyze cell morphology in 3D image data. To process the vast amount of image data generated by current digitized imaging techniques, automated approaches are demanded more than ever.…

Computer Vision and Pattern Recognition · Computer Science 2020-10-26 Dennis Eschweiler , Malte Rethwisch , Simon Koppers , Johannes Stegmaier

We consider space-efficient single-pass estimation of the number of butterflies, a fundamental bipartite graph motif, from a massive bipartite graph stream where each edge represents a connection between entities in two different…

Data Structures and Algorithms · Computer Science 2019-08-30 Seyed-Vahid Sanei-Mehri , Yu Zhang , Ahmet Erdem Sariyuce , Srikanta Tirthapura

The plane wave method is most widely used for solving the Kohn-Sham equations in first-principles materials science computations. In this procedure, the three-dimensional (3-dim) trial wave functions' fast Fourier transform (FFT) is a…

Computational Physics · Physics 2018-01-17 Xingyu Gao , Zeyao Mo , Jun Fang , Han Wang

The authors present SHarmonic, a new implementation of the spherical harmonics targeted for electronic-structure calculations. Their approach is to use explicit formulas for the harmonics written in terms of normalized Cartesian…

Computational Physics · Physics 2025-10-08 Xavier Andrade , Jacopo Simoni , Yuan Ping , Tadashi Ogitsu , Alfredo A. Correa

An efficient method for the construction of a multiaffine process, with prescribed scaling exponents, is presented. At variance with the previous proposals, this method is sequential and therefore it is the natural candidate in numerical…

chao-dyn · Physics 2009-10-30 L. Biferale , G. Boffetta , A. Celani , A. Crisanti , A. Vulpiani

A program to calculate the three-particle hyperspherical brackets is presented. Test results are listed and it is seen that the program is well applicable up to very high values of the hypermomentum and orbital momenta. The listed runs show…

Computational Physics · Physics 2020-06-16 Victor D. Efros

Recently, numerous meta-heuristic based approaches are deliberated to reduce the computational complexities of several existing approaches that include tricky derivations, very large memory space requirement, initial value sensitivity etc.…

Neural and Evolutionary Computing · Computer Science 2020-11-23 Bryar A. Hassan

3D image processing constitutes nowadays a challenging topic in many scientific fields such as medicine, computational physics and informatics. Therefore, development of suitable tools that guaranty a best treatment is a necessity.…

Numerical Analysis · Computer Science 2018-05-22 Malika Jallouli , Wafa Bel Hadj Khalifa , Anouar Ben Mabrouk , Mohamed Ali Mahjoub

We develop a sampling scheme on the sphere that permits accurate computation of the spherical harmonic transform and its inverse for signals band-limited at $L$ using only $L^2$ samples. We obtain the optimal number of samples given by the…

Information Theory · Computer Science 2014-07-25 Zubair Khalid , Rodney A. Kennedy , Jason D. McEwen

In this paper, we design an algorithm to accelerate the diffusion process on the $SO(3)$ manifold. The inherently sequential nature of diffusion models necessitates substantial time for denoising perturbed data. To overcome this limitation,…

Machine Learning · Computer Science 2025-07-15 Yan-Ting Chen , Hao-Wei Chen , Tsu-Ching Hsiao , Chun-Yi Lee

Fast linear transforms are ubiquitous in machine learning, including the discrete Fourier transform, discrete cosine transform, and other structured transformations such as convolutions. All of these transforms can be represented by dense…

Machine Learning · Computer Science 2021-01-01 Tri Dao , Albert Gu , Matthew Eichhorn , Atri Rudra , Christopher Ré

We develop an efficient numerical scheme for the 3D mean-field spherical dynamo equation. The scheme is based on a semi-implicit discretization in time and a spectral method in space based on the divergence-free spherical harmonic…

Numerical Analysis · Mathematics 2019-10-04 Ting cheng , Lina Ma , Jie Shen

We present a general diagrammatic approach to the construction of efficient algorithms for computing the Fourier transform of a function on a finite group. By extending work which connects Bratteli diagrams to the construction of Fast…

Representation Theory · Mathematics 2015-12-09 David Maslen , Daniel N. Rockmore , Sarah Wolff

We present the 2-point function from Fast and Accurate Spherical Bessel Transformation (2-FAST) algorithm for a fast and accurate computation of integrals involving one or two spherical Bessel functions. These types of integrals occur when…

Cosmology and Nongalactic Astrophysics · Physics 2018-01-17 Henry S. Grasshorn Gebhardt , Donghui Jeong

In this paper we describe a numerical method designed for modelling different kinds of astrophysical flows in three dimensions. Our method is a standard explicit finite difference method employing the local shearing-box technique. To model…

Astrophysics · Physics 2009-11-06 S. E. Caunt , M. J. Korpi

Many matrices associated with fast transforms posess a certain low-rank property characterized by the existence of several block partitionings of the matrix, where each block is of low rank. Provided that these partitionings are known,…

Numerical Analysis · Mathematics 2023-07-04 Léon Zheng , Gilles Puy , Elisa Riccietti , Patrick Pérez , Rémi Gribonval

In this talk I propose a new computational scheme with overlap fermions and a fast algorithm to invert the corresponding Dirac operator.

High Energy Physics - Lattice · Physics 2015-06-25 A. Borici

In this paper, fast and efficient discrete sine transformation (DST) algorithms are presented based on the factorization of sparse, scaled orthogonal, rotation, rotation-reflection, and butterfly matrices. These algorithms are completely…

Information Theory · Computer Science 2016-01-19 Sirani M. Perera

Fast Fourier transform (FFT) of large number of samples requires huge hardware resources of field programmable gate arrays (FPGA), which needs more area and power. In this paper, we present an area efficient architecture of FFT processor…

Hardware Architecture · Computer Science 2015-02-26 Atin Mukherjee , Amitabha Sinha , Debesh Choudhury

We introduce two efficient algorithms for computing the partial Fourier transforms in one and two dimensions. Our study is motivated by the wave extrapolation procedure in reflection seismology. In both algorithms, the main idea is to…

Numerical Analysis · Mathematics 2008-02-13 Lexing Ying , Sergey Fomel