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Periodicity in population dynamics is a fundamental issue. In addition to current species-specific analyses, allometry facilitates understanding of limit cycles amongst different species. So far, body-size regressions have been derived for…

Quantitative Methods · Quantitative Biology 2010-04-23 Christian Mulder , A. Jan Hendriks

Production of energy is a foundation of life. Metabolic rate of organisms (amount of energy produced per unit time) generally increases slower than organisms' mass, which has important implications for life organization. This phenomenon,…

Other Quantitative Biology · Quantitative Biology 2024-10-08 Yuri K. Shestopaloff

Arabidopsis roots show oscillatory growth patterns on homogeneous agar surfaces, whereas other plants, such as maize, do not. Although several explanations have been proposed, a simple and general model that makes testable predictions…

Biological Physics · Physics 2026-05-01 Riz Fernando Noronha , Kunihiko Kaneko , Koichi Fujimoto

We study the population size time series of a Neotropical small mammal with the intent of detecting and modelling population regulation processes generated by density-dependent factors and their possible delayed effects. The application of…

Populations and Evolution · Quantitative Biology 2017-02-20 E. Brigatti , M. V. Vieira , M. Kajin , P. J. A. L. Almeida , M. A. de Menezes , R. Cerqueira

The mechanisms and properties of synchronization of oscillating ecological populations attract attention because it is a fairly common phenomenon and because spatial synchrony may elevate a risk of extinction and may lead to other…

Populations and Evolution · Quantitative Biology 2021-04-26 Sungwoo Ahn , Leonid L Rubchinsky

Estimation of molecular evolutionary divergence times requires models of rate change. These vary with regard to the assumption of what quantity is penalized. The possibilities considered are the rate of evolution, the log of the rate of…

Genomics · Quantitative Biology 2007-12-31 Peter J Waddell

Metabolism of living organisms is a foundation of life. The metabolic rate (energy production per unit time) increases slower than organisms' mass. When this phenomenon is considered across different species, it is called interspecific…

Other Quantitative Biology · Quantitative Biology 2016-11-30 Yuri K. Shestopaloff

We derive an alternative expression for a delayed logistic equation in which the rate of change in the population involves a growth rate that depends on the population density during an earlier time period. In our formulation, the delay in…

Dynamical Systems · Mathematics 2022-06-07 Chiu-Ju Lin , Ting-Hao Hsu , Gail S. K. Wolkowicz

In population dynamics, mathematical models often contain too many parameters to be easily testable. A way to reliably estimate parameters for a broad range of systems would help us obtain clearer predictions from theory. In this paper, we…

Biological Physics · Physics 2019-05-08 Andreas Eilersen , Kim Sneppen

Identifying early warning signs of sudden population changes and mechanisms leading to regime shifts are highly desirable in population biology. In this paper, a two-trophic ecosystem comprising of two species of predators, competing for…

Populations and Evolution · Quantitative Biology 2022-09-23 Susmita Sadhu

Population cycles are important components of many natural systems. Most studied in short-lived and small-bodied species, cycles frequently appear to be driven by density-dependent feedbacks. However, compelling evidence of cycles -- often…

Populations and Evolution · Quantitative Biology 2026-01-22 Marron McConnell , William F. Fagan

One of the major characteristics of living organisms is metabolic rate, which is the amount of energy produced per unit of time. When the mass of organisms increases, the metabolic rate also increases (usually as a power function of mass),…

Other Quantitative Biology · Quantitative Biology 2024-12-02 Yuri K. Shestopaloff

We design a stochastic individual-based model structured in energy, for single species consuming an external resource, where populations are characterized by a typical energy at birth in $\mathbb{R}^{*}_{+}$. The resource is maintained at a…

Probability · Mathematics 2025-01-27 Sylvain Billiard , Virgile Brodu , Nicolas Champagnat , Coralie Fritsch

Divergence time estimation requires the reconciliation of two major sources of data. These are fossil and/or biogeographic evidence that give estimates of the absolute age of nodes (ancestors) and molecular estimates that give us estimates…

Populations and Evolution · Quantitative Biology 2008-12-31 Peter J Waddell

Understanding the cross-species behavior of cancer is important for uncovering fundamental mechanisms of carcinogenesis, and for translating results of model systems between species. One of the most famous interspecific considerations of…

Other Quantitative Biology · Quantitative Biology 2020-11-24 Christopher P. Kempes , Geoffrey B. West , John W. Pepper

The ecological dynamics of interacting predator and prey populations can display sustained oscillations, as for instance predicted by the Rosenzweig-MacArthur predator-prey model. The presence of demographic stochasticity, due to the…

Populations and Evolution · Quantitative Biology 2025-03-10 Solmaz Golmohammadi , Mina Zarei , Jacopo Grilli

Individual resource intake rates are known to depend on both individual body size and resource availability. Here, we have developed a model to integrate these two drivers, accounting explicitly for the scaling of perceived resource…

Populations and Evolution · Quantitative Biology 2010-02-18 Alberto Basset , Francesco Paparella , Francesco Cozzoli

We extend a previously theory for the interspecific allometric scaling developed in a $d+1$-dimensional space of metabolic states. The time, which is characteristic of all biological processes, is included as an extra dimension to $d$…

Biological Physics · Physics 2008-02-12 Jafferson K. L. da Silva , Lauro A. Barbosa

We develop a mathematical model of extinction and coexistence in a generic predator-prey ecosystem composed of two herbivores in asymmetrical competition and a hunter exerting a predatory pressure on both species. With the aim of…

Adaptation and Self-Organizing Systems · Physics 2017-08-28 Marcelo N Kuperman , Fabiana Laguna , Guillermo Abramson , Adrian Monjeau. Jose Luis Lanata

A longstanding problem in biology has been the origin of pervasive quarter-power allometric scaling laws that relate many characteristics of organisms to body mass (M) across the entire spectrum of life from molecules and microbes to…

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