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This paper proposes an extension of the traditional Central Dogma of molecular biology to a more dynamic model termed the Central Dogma Cycle (CDC) and a broader network called the Central Dogma Cyclic Network (CDCN). While the Central…

Molecular Networks · Quantitative Biology 2025-06-23 Martin R. Schiller

Direct Coupling Analysis (DCA) is a now widely used method to leverage statistical information from many similar biological systems to draw meaningful conclusions on each system separately. DCA has been applied with great success to…

Populations and Evolution · Quantitative Biology 2018-08-13 Chen-Yi Gao , Fabio Cecconi , Angelo Vulpiani , Hai-Jun Zhou , Erik Aurell

We propose a novel statistical method for testing the results of anomaly detection (AD) under domain adaptation (DA), which we call CAD-DA -- controllable AD under DA. The distinct advantage of the CAD-DA lies in its ability to control the…

Machine Learning · Statistics 2023-10-24 Vo Nguyen Le Duy , Hsuan-Tien Lin , Ichiro Takeuchi

Recent extensions of Cellular Automata (CA) have incorporated key ideas from modern deep learning, dramatically extending their capabilities and catalyzing a new family of Neural Cellular Automata (NCA) techniques. Inspired by…

Computer Vision and Pattern Recognition · Computer Science 2022-11-03 Mattie Tesfaldet , Derek Nowrouzezahrai , Christopher Pal

Spontaneous self-replication in cellular automata has long been considered rare, with most known examples requiring careful design or artificial initialization. In this paper, we present formal, causal evidence that such replication can…

Cellular Automata and Lattice Gases · Physics 2025-08-12 Arend Hintze , Clifford Bohm

In recent years, neural networks have become the default choice for image classification and many other learning tasks, even though they are vulnerable to so-called adversarial attacks. To increase their robustness against these attacks,…

Machine Learning · Computer Science 2020-02-10 Hasan Ferit Eniser , Maria Christakis , Valentin Wüstholz

Methods for analysis of principal components in discrete data have existed for some time under various names such as grade of membership modelling, probabilistic latent semantic analysis, and genotype inference with admixture. In this paper…

Machine Learning · Computer Science 2012-07-19 Wray L. Buntine , Aleks Jakulin

Melanoma is a leading cause of deaths due to skin cancer deaths and hence, early and effective diagnosis of melanoma is of interest. Current approaches for automated diagnosis of melanoma either use pattern recognition or analytical…

Computer Vision and Pattern Recognition · Computer Science 2021-06-16 Prathyusha Akundi , Soumyasis Gun , Jayanthi Sivaswamy

The Dynamical Cluster Approximation (DCA) is modified to include disorder. The DCA incorporates non-local corrections to local approximations such as the Coherent Potential Approximation (CPA) by mapping the lattice problem with disorder,…

Disordered Systems and Neural Networks · Physics 2009-10-31 M. Jarrell , H. R. Krishnamurthy

Artificial Immune Systems(AIS) have been widely used in different fields, such as control, robotics, computer science and multi-agent systems. In this paper is proposed a new approach of neural immune PD type tracking control combining…

Systems and Control · Computer Science 2016-04-25 YongChol Sin , HyeGyong Sin , GyongIl Ryang

In this paper, a decimal first degree cellular automata (FDCA) based clustering algorithm is proposed where clusters are created based on reachability. Cyclic spaces are created and configurations which are in the same cycle are treated as…

Formal Languages and Automata Theory · Computer Science 2024-05-09 Vicky Vikrant , Narodia Parth P , Kamalika Bhattacharjee

Prior works on physical adversarial camouflage against vehicle detectors mainly focus on the effectiveness and robustness of the attack. The current most successful methods optimize 3D vehicle texture at a pixel level. However, this results…

Computer Vision and Pattern Recognition · Computer Science 2024-09-27 Linye Lyu , Jiawei Zhou , Daojing He , Yu Li

Anomaly detection has become an indispensable tool for modern society, applied in a wide range of applications, from detecting fraudulent transactions to malignant brain tumours. Over time, many anomaly detection techniques have been…

Machine Learning · Computer Science 2021-10-26 Mikael Sabuhi , Ming Zhou , Cor-Paul Bezemer , Petr Musilek

The biological immune system is a robust, complex, adaptive system that defends the body from foreign pathogens. It is able to categorize all cells (or molecules) within the body as self-cells or non-self cells. It does this with the help…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Uwe Aickelin , Dipankar Dasgupta

Nowadays Intrusion Detection System (IDS) which is increasingly a key element of system security is used to identify the malicious activities in a computer system or network. There are different approaches being employed in intrusion…

Cryptography and Security · Computer Science 2013-04-15 Mostaque Md. Morshedur Hassan

We propose a novel approach to solving input- and state-constrained parametric mixed-integer optimal control problems using Differentiable Predictive Control (DPC). Our approach follows the differentiable programming paradigm by learning an…

Systems and Control · Electrical Eng. & Systems 2025-06-25 Ján Boldocký , Shahriar Dadras Javan , Martin Gulan , Martin Mönnigmann , Ján Drgoňa

We argue that immune system is an adaptive complex system. It is shown that it has emergent properties. Its network structure is of the small world network type. The network is of the threshold type, which helps in avoiding autoimmunity. It…

Populations and Evolution · Quantitative Biology 2008-01-08 E. Ahmed , A. H. Hashish

In this paper, we analyze the algebraic structure of some null boundary as well as some periodic boundary 2-D Cellular Automata (CA) rules by introducing a new matrix multiplication operation using only AND, OR instead of most commonly used…

Discrete Mathematics · Computer Science 2008-08-12 Sudhakar Sahoo , Sanjaya Sahoo , Birendra Kumar Nayak , Pabitra Pal Choudhury

This study focuses on an extended model of a standard cellular automaton (CA) that includes an extra index consisting of a radius that defines a perception area for each cell in addition to the radius defined by the CA rule. Extended…

Computational Complexity · Computer Science 2015-12-22 Yoshihiko Kayama

Network intrusion detection systems (NIDSs) have a role of identifying malicious activities by monitoring the behavior of networks. Due to the currently high volume of networks trafic in addition to the increased number of attacks and their…

Neural and Evolutionary Computing · Computer Science 2014-05-07 Omar S. Soliman , Aliaa Rassem