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There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…

Populations and Evolution · Quantitative Biology 2007-05-23 Frederick A. Matsen , Steven N. Evans

Using each node's degree as a proxy for its importance, the topological hierarchy of a complex network is introduced and quantified. We propose a simple dynamical process used to construct networks which are either maximally or minimally…

Soft Condensed Matter · Physics 2008-06-24 Ala Trusina , Sergei Maslov , Petter Minnhagen , Kim Sneppen

Symmetry plays an important role in the topological band theory. In contrary, study on the topological properties of the asymmetric systems is rather limited, especially in higher-dimensional systems. In this work, we explore a new theory…

Mesoscale and Nanoscale Physics · Physics 2025-09-26 Yunlin Li , Yufu Liu , Xuezhi Wang , Haoran Zhang , Xunya Jiang

This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

Neurons and Cognition · Quantitative Biology 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

We use the homological perturbation lemma to produce explicit formulas computing the class in the twisted de Rham complex represented by an arbitrary polynomial. This is a non-asymptotic version of the method of Feynman diagrams. In…

Mathematical Physics · Physics 2019-11-05 Theo Johnson-Freyd

Non-asymptotic theory of random matrices strives to investigate the spectral properties of random matrices, which are valid with high probability for matrices of a large fixed size. Results obtained in this framework find their applications…

Probability · Mathematics 2013-08-02 Mark Rudelson

Cambrian trees are oriented and labeled trees which fulfill local conditions around each node generalizing the conditions for classical binary search trees. Based on the bijective correspondence between signed permutations and leveled…

Combinatorics · Mathematics 2023-11-14 Grégory Chatel , Vincent Pilaud

Any Boolean function corresponds with a complete full binary decision tree. This tree can in turn be represented in a maximally compact form as a direct acyclic graph where common subtrees are factored and shared, keeping only one copy of…

Data Structures and Algorithms · Computer Science 2020-05-26 Julien Clément , Antoine Genitrini

In this work, we study the concept of self-overlapping permutations, which is related to the larger study of consecutive patterns in permutations. We show that this concept admits a simple and clear geometrical meaning, and prove that a…

Combinatorics · Mathematics 2025-03-20 Sergey Kirgizov , Khaydar Nurligareev

We introduce a new category of higher-dimensional automata in which the morphisms are functional homotopy simulations, i.e. functional simulations up to concurrency of independent events. For this, we use unfoldings of higher-dimensional…

Logic in Computer Science · Computer Science 2014-09-23 Uli Fahrenberg , Axel Legay

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

We propose an axiomatic characterization of coarse homology theories defined on the category of bornological coarse spaces. We construct a category of motivic coarse spectra. Our focus is the classification of coarse homology theories and…

Algebraic Topology · Mathematics 2020-04-28 Ulrich Bunke , Alexander Engel

The problem of extrapolating asymptotic perturbation-theory expansions in powers of a small variable to large values of the variable tending to infinity is investigated. The analysis is based on self-similar approximation theory. Several…

Mathematical Physics · Physics 2014-09-08 S. Gluzman , V. I. Yukalov

We compute the posterior distributions of the initial population and parameter of binary branching processes, in the limit of a large number of generations. We compare this Bayesian procedure with a more na\"ive one, based on hitting times…

Probability · Mathematics 2008-12-18 Didier Piau

A hypertree, or $\mathbb{Q}$-acyclic complex, is a higher-dimensional analogue of a tree. We study random $2$-dimensional hypertrees according to the determinantal measure suggested by Lyons. We are especially interested in their…

Algebraic Topology · Mathematics 2020-04-29 Matthew Kahle , Andrew Newman

Persistent homology provides a robust methodology to infer topological structures from point cloud data. Here we explore the persistent homology of point clouds embedded into a probabilistic setting, exploiting the theory of point…

Probability · Mathematics 2023-08-07 Daniel Spitz , Anna Wienhard

We study the asymptotics of the $p$-mapping model of random mappings on $[n]$ as $n$ gets large, under a large class of asymptotic regimes for the underlying distribution $p$. We encode these random mappings in random walks which are shown…

Probability · Mathematics 2007-05-23 David J. Aldous , Gregory Miermont , Jim Pitman

We consider the rooted trees which not have isomorphic representation and introduce a conception of complexity a natural number also. The connection between quantity such trees with $n$ edges and a complexity of natural number $n$ is…

Combinatorics · Mathematics 2012-05-03 B. S. Kochkarev

Sample correlation matrices are employed ubiquitously in statistics. However, quite surprisingly, little is known about their asymptotic spectral properties for high-dimensional data, particularly beyond the case of "null models" for which…

Statistics Theory · Mathematics 2019-03-13 David Morales-Jimenez , Iain M. Johnstone , Matthew R. McKay , Jeha Yang

We define a class of probability distributions that we call simplicial mixture models, inspired by simplicial complexes from algebraic topology. The parameters of these distributions represent their topology and we show that it is possible…

Statistics Theory · Mathematics 2019-09-24 James T. Griffin