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Substantial grounds exist to doubt the universal validity of the Newtonian Paradigm that requires a pre-stated, fixed phase space. Therefore, the Second Law of Thermodynamics, stated only for fixed phase spaces, is also in doubt. The…

History and Philosophy of Physics · Physics 2022-10-12 Stuart Kauffman

This paper explores the idea that information is an essential and distinctive feature of living systems. Unlike non-living systems, living systems actively acquire, process, and use information about their environments to respond to…

There is an intrinsic relationship between the molecular evolution in primordial period and the properties of genomes and proteomes of contemporary species. The genomic data may help us understand the driving force of evolution of life at…

Genomics · Quantitative Biology 2009-11-25 Dirson Jian Li , Shengli Zhang

Biological evolution is realised through the same mechanisms of birth and death that underlie change in population density. The deep interdependence between ecology and evolution is well-established, and recent models focus on integrating…

Populations and Evolution · Quantitative Biology 2025-10-14 A. Bradley Duthie , Victor J. Luque

Due to recent advances in synthetic biology and artificial life, the origin of life is currently a hot topic of research. We review the literature and argue that the two traditionally competing "replicator-first" and "metabolism-first"…

Artificial Intelligence · Computer Science 2013-11-21 Tom Froese , Nathaniel Virgo , Takashi Ikegami

Recent research has extended methods from the fields of thermodynamics and statistical mechanics into other disciplines. Most notably, one recent work creates a unified theoretical framework to understand evolutionary biology, machine…

Populations and Evolution · Quantitative Biology 2024-05-22 Daniel Sadasivan , Cole Cantu , Cecilia Marsh , Andrew Graham

The evolution of entropy is derived with respect to dynamical systems. For a stochastic system, its relative entropy $D$ evolves in accordance with the second law of thermodynamics; its absolute entropy $H$ may also be so, provided that the…

Chaotic Dynamics · Physics 2010-08-31 X. San Liang

The universal validity of the second law of thermodynamics is widely attributed to a finely tuned initial condition of the universe. This creates a problem: why is the universe atypical? We suggest that the problem is an artefact created by…

General Relativity and Quantum Cosmology · Physics 2015-07-27 Julian Barbour , Tim Koslowski , Flavio Mercati

Through extensive studies of dynamical system modeling cellular growth and reproduction, we find evidence that complexity arises in multicellular organisms naturally through evolution. Without any elaborate control mechanism, these systems…

Adaptation and Self-Organizing Systems · Physics 2009-10-31 Chikara Furusawa , Kunihiko Kaneko

Biological macromolecules, proteins and nucleic acids are composed exclusively of chirally pure monomers. The chirality consensus appears vital for life and it has even been considered as a prerequisite of life. However the primary cause…

Populations and Evolution · Quantitative Biology 2009-06-02 Salla Jaakkola , Vivek Sharma , Arto Annila

The concept of entropy in nonequilibrium macroscopic systems is investigated in the light of an extended equation of motion for the density matrix obtained in a previous study. It is found that a time-dependent information entropy can be…

Statistical Mechanics · Physics 2009-11-10 W. T. Grandy

For more than 100 years, humanity (both specialists and enthusiastic laics) has been searching for extraterrestrial life hoping we are not alone. The first step in the quest for extraterrestrial life is to define what and where exactly to…

Other Quantitative Biology · Quantitative Biology 2018-10-25 Marko Popovic

The present work shows that the second law of thermodynamics gets naturally satisfied during the entire cosmic evolution of the universe starting from inflation to the late dark energy era, without imposing any exotic condition. This makes…

General Relativity and Quantum Cosmology · Physics 2025-02-05 Sergei D. Odintsov , Tanmoy Paul , Soumitra SenGupta

The purpose of this study is to consider the near future of civilization in the framework of thermodynamics. Kardashev's proposal to evaluate the development of celestial civilizations by the amount of energy they are able to use was…

Physics and Society · Physics 2021-07-12 Vladimir Kh. Dobruskin

Why do quantum evolutions occur and why do they stop at certain points? In classical thermodynamics affinity was introduced to predict in which direction an irreversible process proceeds. In this paper the quantum mechanical counterpart of…

Quantum Physics · Physics 2018-12-11 B. Ahmadi , S. Salimi , F. Kheirandish , A. S. Khorashad

It is probably not a coincidence that two of the pioneers of thermodynamics, Helmholtz and Mayer, were physicians. Thermodynamics studies the transformations of energy, and such transformations ceaselessly take place in all living systems…

Biological Physics · Physics 2007-05-23 Shahar Dolev , Avshalom C. Elitzur

In the scientific and engineering literature, the second law of thermodynamics is expressed in terms of the behavior of entropy in reversible and irreversible processes. According to the prevailing statistical mechanics interpretation the…

Quantum Physics · Physics 2007-05-23 Elias P. Gyftopoulos , Gian Paolo Beretta

Equilibrium is a rather ideal situation, the exception rather than the rule in Nature. Whenever the external or internal parameters of a physical system are varied its subsequent relaxation to equilibrium may be either impossible or take…

Statistical Mechanics · Physics 2016-10-04 Leticia F. Cugliandolo

We discuss universality of response functions in systems with excited degrees of freedom. We propose a unification of two existing phenomenologies, two-power law decay and deviation from power law due to non-extensivity. A universal curve…

Statistical Mechanics · Physics 2007-05-23 Jan Naudts , Marek Czachor

A natural phenomenon occurring in a living system is an outcome of the dynamics of the specific biological network underlying the phenomenon. The collective dynamics have both deterministic and stochastic components. The stochastic nature…

Statistical Mechanics · Physics 2023-09-01 Indrani Bose