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The concept of control is crucial for effectively understanding and applying biological network models. Key structural features relate to control functions through gene regulation, signaling, or metabolic mechanisms, and computational…

Molecular Networks · Quantitative Biology 2024-11-05 David Murrugarra , Alan Veliz-Cuba , Elena Dimitrova , Claus Kadelka , Matthew Wheeler , Reinhard Laubenbacher

Distributed optimization algorithms are widely used in many industrial machine learning applications. However choosing the appropriate algorithm and cluster size is often difficult for users as the performance and convergence rate of…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-02-21 Xinghao Pan , Shivaram Venkataraman , Zizheng Tai , Joseph Gonzalez

In the last few years, the formulation of real-world optimization problems and their efficient solution via metaheuristic algorithms has been a catalyst for a myriad of research studies. In spite of decades of historical advancements on the…

We consider a class of submodular maximization problems in which decision-makers have limited access to the objective function. We explore scenarios where the decision-maker can observe only pairwise information, i.e., can evaluate the…

Data Structures and Algorithms · Computer Science 2022-02-09 Andrew Downie , Bahman Gharesifard , Stephen L. Smith

Large language models (LMs) have been shown to memorize parts of their training data, and when prompted appropriately, they will emit the memorized training data verbatim. This is undesirable because memorization violates privacy (exposing…

Machine Learning · Computer Science 2023-03-07 Nicholas Carlini , Daphne Ippolito , Matthew Jagielski , Katherine Lee , Florian Tramer , Chiyuan Zhang

The problem of maximizing a constrained monotone set function has many practical applications and generalizes many combinatorial problems. Unfortunately, it is generally not possible to maximize a monotone set function up to an acceptable…

Data Structures and Algorithms · Computer Science 2014-08-29 Moran Feldman , Rani Izsak

We investigate the performance of a deterministic GREEDY algorithm for the problem of maximizing functions under a partition matroid constraint. We consider non-monotone submodular functions and monotone subadditive functions. Even though…

Discrete Mathematics · Computer Science 2019-02-22 Tobias Friedrich , Andreas Göbel , Frank Neumann , Francesco Quinzan , Ralf Rothenberger

Rotation dynamics of eigenvectors of modular network adjacency matrices under random perturbations are presented. In the presence of $q$ communities, the number of eigenvectors corresponding to the $q$ largest eigenvalues form a "community"…

Physics and Society · Physics 2016-07-20 Somwrita Sarkar , Sanjay Chawla , Peter A. Robinson , Santo Fortunato

A wide variety of problems in machine learning, including exemplar clustering, document summarization, and sensor placement, can be cast as constrained submodular maximization problems. A lot of recent effort has been devoted to developing…

Data Structures and Algorithms · Computer Science 2016-08-15 Rafael da Ponte Barbosa , Alina Ene , Huy L. Nguyen , Justin Ward

Influence maximization is the problem of finding the set of nodes of a network that maximizes the size of the outbreak of a spreading process occurring on the network. Solutions to this problem are important for strategic decisions in…

Physics and Society · Physics 2019-10-23 Sirag Erkol , Claudio Castellano , Filippo Radicchi

We study the maximum capture problem in facility location under random utility models, i.e., the problem of seeking to locate new facilities in a competitive market such that the captured user demand is maximized, assuming that each…

Optimization and Control · Mathematics 2022-03-29 Tien Thanh Dam , Thuy Anh Ta , Tien Mai

We investigate the performance of m-th order consensus systems with stochastic external perturbations, where a subset of leader nodes incorporates absolute information into their control laws. The system performance is measured by its…

Optimization and Control · Mathematics 2019-06-13 Erika Mackin , Stacy Patterson

Neural networks are powerful functions with widespread use, but the theoretical behaviour of these functions is not fully understood. Creating deep neural networks by stacking many layers has achieved exceptional performance in many…

Machine Learning · Computer Science 2024-08-16 Cameron Jakub , Mihai Nica

Identifying clusters of vertices in graphs continues to be an important problem, and modularity continues to be used as a tool for solving the problem. Modularity, which measures the quality of a division of the vertices into clusters,…

Social and Information Networks · Computer Science 2021-09-13 Larry Wilson

Let $\Lambda$ be a finite dimensional algebra over an algebraically closed field. We exhibit slices of the representation theory of $\Lambda$ that are always classifiable in stringent geometric terms. Namely, we prove that, for any…

Representation Theory · Mathematics 2014-07-11 H. Derksen , B. Huisgen-Zimmermann , J. Weyman

Many large-scale machine learning problems--clustering, non-parametric learning, kernel machines, etc.--require selecting a small yet representative subset from a large dataset. Such problems can often be reduced to maximizing a submodular…

Machine Learning · Computer Science 2016-06-28 Baharan Mirzasoleiman , Amin Karbasi , Rik Sarkar , Andreas Krause

To perform recognition, molecules must locate and specifically bind their targets within a noisy biochemical environment with many look-alikes. Molecular recognition processes, especially the induced-fit mechanism, are known to involve…

Biomolecules · Quantitative Biology 2010-07-27 Yonatan Savir , Tsvi Tlusty

Complex systems are usually illustrated by networks which captures the topology of the interactions between the entities. To better understand the roles played by the entities in the system one needs to uncover the underlying community…

Social and Information Networks · Computer Science 2016-05-23 Han Zhang , Chang-Dong Wang , Jian-Huang Lai , Philip S. Yu

There are many problems in machine learning and data mining which are equivalent to selecting a non-redundant, high "quality" set of objects. Recommender systems, feature selection, and data summarization are among many applications of…

Machine Learning · Computer Science 2019-04-19 Mehrdad Ghadiri , Mark Schmidt

Detecting communities in large networks has drawn much attention over the years. While modularity remains one of the more popular methods of community detection, the so-called resolution limit remains a significant drawback. To overcome…

Physics and Society · Physics 2011-08-02 V. A. Traag , P. Van Dooren , Y. Nesterov