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Over the last decade, a large variety of clustering algorithms have been developed to detect coregulatory relationships among genes from microarray gene expression data. Model based clustering approaches have emerged as statistically well…

Quantitative Methods · Quantitative Biology 2008-01-15 Anagha Joshi , Yves Van de Peer , Tom Michoel

Hierarchical clustering is a popular unsupervised data analysis method. For many real-world applications, we would like to exploit prior information about the data that imposes constraints on the clustering hierarchy, and is not captured by…

Data Structures and Algorithms · Computer Science 2018-07-17 Vaggos Chatziafratis , Rad Niazadeh , Moses Charikar

Biclustering is a powerful approach to search for patterns in data, as it can be driven by a function that measures the quality of diverse types of patterns of interest. However, due to its computational complexity, the exploration of the…

Machine Learning · Computer Science 2021-04-27 Marcin Michalak , Jesús S. Aguilar-Ruiz

A first step in exploring population structure in crop plants and other organisms is to define the number of subpopulations that exist for a given data set. The genetic marker data sets being generated have become increasingly large over…

Applications · Statistics 2014-01-09 Mark A. Newell , Dianne Cook , Heike Hofmann , Jean-Luc Jannink

In this paper, we study different discrete data clustering methods, which use the Model-Based Clustering (MBC) framework with the Multinomial distribution. Our study comprises several relevant issues, such as initialization, model…

Machine Learning · Computer Science 2015-09-08 Md. Abul Hasnat , Julien Velcin , Stéphane Bonnevay , Julien Jacques

Dynamic multimodal multiobjective optimization presents the dual challenge of simultaneously tracking multiple equivalent pareto optimal sets and maintaining population diversity in time-varying environments. However, existing dynamic…

Artificial Intelligence · Computer Science 2025-12-23 Li Yan , Bolun Liu , Chao Li , Jing Liang , Kunjie Yu , Caitong Yue , Xuzhao Chai , Boyang Qu

Co-clustering targets on grouping the samples (e.g., documents, users) and the features (e.g., words, ratings) simultaneously. It employs the dual relation and the bilateral information between the samples and features. In many realworld…

Machine Learning · Computer Science 2016-11-18 Ping Li , Jiajun Bu , Chun Chen , Zhanying He , Deng Cai

Algorithms proposed for solving high-dimensional optimization problems with no derivative information frequently encounter the "curse of dimensionality," becoming ineffective as the dimension of the parameter space grows. One feature of a…

Optimization and Control · Mathematics 2020-04-28 Dmitry Pozharskiy , Noah J. Wichrowski , Andrew B. Duncan , Grigorios A. Pavliotis , Ioannis G. Kevrekidis

Biclustering is an effective technique in data mining and pattern recognition. Biclustering algorithms based on traditional clustering face two fundamental limitations when processing high-dimensional data: (1) The distance concentration…

Machine Learning · Computer Science 2025-05-01 Yan Huang , Da-Qing Zhang

We propose a new multi-network-based strategy to integrate different layers of genomic information and use them in a coordinate way to identify driving cancer genes. The multi-networks that we consider combine transcription factor…

Molecular Networks · Quantitative Biology 2015-12-10 Laura Cantini , Enzo Medico , Santo Fortunato , Michele Caselle

Fusion and inference from multiple and massive disparate data sources - the requirement for our most challenging data analysis problems and the goal of our most ambitious statistical pattern recognition methodologies - -has many and varied…

Methodology · Statistics 2011-12-26 Carey E. Priebe , David J. Marchette , Zhiliang Ma , Sancar Adali

In this work we are interested in stochastic particle methods for multi-objective optimization. The problem is formulated using parametrized, single-objective sub-problems which are solved simultaneously. To this end a consensus based…

Optimization and Control · Mathematics 2022-08-03 Giacomo Borghi , Michael Herty , Lorenzo Pareschi

Binary vector embeddings enable fast nearest neighbor retrieval in large databases of high-dimensional objects, and play an important role in many practical applications, such as image and video retrieval. We study the problem of learning…

Computer Vision and Pattern Recognition · Computer Science 2018-06-26 Fatih Cakir , Kun He , Sarah Adel Bargal , Stan Sclaroff

Multi-target tracking is an important problem in civilian and military applications. This paper investigates multi-target tracking in distributed sensor networks. Data association, which arises particularly in multi-object scenarios, can be…

Multiagent Systems · Computer Science 2018-12-04 Mark R. Leonard , Abdelhak M. Zoubir

Background With microarray technology becoming mature and popular, the selection and use of a small number of relevant genes for accurate classification of samples is a hot topic in the circles of biostatistics and bioinformatics. However,…

Methodology · Statistics 2014-03-05 Suyan Tian , Mayte Suárez-Fariñas

This paper combines the idea of a hierarchical distributed genetic algorithm with different inter-agent partnering strategies. Cascading clusters of sub-populations are built from bottom up, with higher-level sub-populations optimising…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Uwe Aickelin

We propose Data Swarms, an algorithm to optimize the generation of synthetic evaluation data and advance quantitative desiderata of LLM evaluation. We first train a swarm of initial data generators using existing data, and define various…

Computation and Language · Computer Science 2025-06-09 Shangbin Feng , Yike Wang , Weijia Shi , Yulia Tsvetkov

Data rebalancing techniques, including oversampling and undersampling, are a common approach to addressing the challenges of imbalanced data. To tackle unresolved problems related to both oversampling and undersampling, we propose a new…

Machine Learning · Computer Science 2025-07-11 Karen Medlin , Sven Leyffer , Krishnan Raghavan

Prediction of patient survival using high-dimensional multi-omics data requires systematic feature selection methods that ensure predictive performance, sparsity, and reliability for prognostic biomarker discovery. We developed a hybrid…

Genomics · Quantitative Biology 2026-04-15 John Zobolas , Anne-Marie George , Alberto López , Sebastian Fischer , Marc Becker , Tero Aittokallio

In order to avoid disadvantages of monocropping for soil and environment, it is advisable to practice intercropping of various plant species whenever possible. However, intercropping is challenging as it requires a balanced planting…

Computers and Society · Computer Science 2021-12-21 Maurice Günder , Nico Piatkowski , Laura von Rueden , Rafet Sifa , Christian Bauckhage
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