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High dimensional correlated binary data arise in many areas, such as observed genetic variations in biomedical research. Data simulation can help researchers evaluate efficiency and explore properties of different computational and…

Methodology · Statistics 2020-07-29 Wei Jiang , Shuang Song , Lin Hou , Hongyu Zhao

We present RKappa, a framework for the development and analysis of rule-based models within a mature, statistically empowered R environment. The infrastructure allows model editing, modification, parameter sampling, simulation, statistical…

Molecular Networks · Quantitative Biology 2014-12-16 Anatoly Sorokin , Oksana Sorokina , J. Douglas Armstrong

Higher-dimensional orthogonal packing problems have a wide range of practical applications, including packing, cutting, and scheduling. Combining the use of our data structure for characterizing feasible packings with our new classes of…

Data Structures and Algorithms · Computer Science 2007-05-23 Sandor P. Fekete , Joerg Schepers , Jan C. van der Veen

The hyperbolic random graph model (HRG) has proven useful in the analysis of scale-free networks, which are ubiquitous in many fields, from social network analysis to biology. However, working with this model is algorithmically and…

Social and Information Networks · Computer Science 2022-05-03 Dorota Celińska-Kopczyńska , Eryk Kopczyński

With the advent of extremely high dimensional datasets, dimensionality reduction techniques are becoming mandatory. Among many techniques, feature selection has been growing in interest as an important tool to identify relevant features on…

High dynamic range (HDR) imaging aims to obtain a high-quality HDR image by fusing information from multiple low dynamic range (LDR) images. Numerous learning-based HDR imaging methods have been proposed to achieve this for static and…

Image and Video Processing · Electrical Eng. & Systems 2025-05-30 Yu Yuan , Yiheng Chi , Xingguang Zhang , Stanley Chan

The rstap package implements Bayesian spatial temporal aggregated predictor models in R using the probabilistic programming language Stan. A variety of distributions and link functions are supported, allowing users to fit this extension to…

Methodology · Statistics 2018-12-27 Adam Peterson , Brisa Sanchez

Determining whether perceptual properties are processed independently is an important goal in perceptual science, and tools to test independence should be widely available to experimental researchers. The best analytical tools to test for…

Neurons and Cognition · Quantitative Biology 2016-10-12 Fabian A. Soto , Emily Zheng , Johnny Fonseca , F. Greg Ashby

We present a sampling-based framework for multi-robot motion planning which combines an implicit representation of a roadmap with a novel approach for pathfinding in geometrically embedded graphs tailored for our setting. Our pathfinding…

Robotics · Computer Science 2014-04-01 Kiril Solovey , Oren Salzman , Dan Halperin

We propose the use of beamplots - which can be produced by using the R package BibPlots and WoS downloads - as a preferred alternative to h index values for assessing single researchers.

Digital Libraries · Computer Science 2020-01-22 Robin Haunschild , Lutz Bornmann , Jonathan Adams

Graph Generating Dependencies (GGDs) informally express constraints between two (possibly different) graph patterns which enforce relationships on both graph's data (via property value constraints) and its structure (via topological…

Databases · Computer Science 2022-11-02 Larissa C. Shimomura , Nikolay Yakovets , George Fletcher

In molecular biology, advances in high-throughput technologies have made it possible to study complex multivariate phenotypes and their simultaneous associations with high-dimensional genomic and other omics data, a problem that can be…

Methodology · Statistics 2021-12-02 Zhi Zhao , Marco Banterle , Leonardo Bottolo , Sylvia Richardson , Alex Lewin , Manuela Zucknick

Modern analysis of high energy physics (HEP) data needs advanced statistical tools to separate signal from background. A C++ package has been implemented to provide such tools for the HEP community. The package includes linear and quadratic…

Data Analysis, Statistics and Probability · Physics 2007-05-23 I. Narsky

Model-based clustering is a popular approach for clustering multivariate data which has seen applications in numerous fields. Nowadays, high-dimensional data are more and more common and the model-based clustering approach has adapted to…

Methodology · Statistics 2018-09-25 Michael Fop , Thomas Brendan Murphy

We consider the problem of high-dimensional non-linear variable selection for supervised learning. Our approach is based on performing linear selection among exponentially many appropriately defined positive definite kernels that…

Machine Learning · Computer Science 2009-09-08 Francis Bach

Hypergraphs, increasingly utilised to model complex and diverse relationships in modern networks, have gained significant attention for representing intricate higher-order interactions. Among various challenges, cohesive subgraph discovery…

Social and Information Networks · Computer Science 2025-07-14 Dahee Kim , Hyewon Kim , Song Kim , Minseok Kim , Junghoon Kim , Yeon-Chang Lee , Sungsu Lim

We introduce an R package, PCMBase, to rapidly calculate the likelihood for multivariate phylogenetic comparative methods. The package is not specific to particular models but offers the user the functionality to very easily implement a…

Populations and Evolution · Quantitative Biology 2019-12-13 Venelin Mitov , Krzysztof Bartoszek , Georgios Asimomitis , Tanja Stadler

In this work, we consider an extension of graphical models to random graphs, trees, and other objects. To do this, many fundamental concepts for multivariate random variables (e.g., marginal variables, Gibbs distribution, Markov properties)…

Machine Learning · Statistics 2017-05-08 Neil Hallonquist

Discovering causal relationships from data is the ultimate goal of many research areas. Constraint based causal exploration algorithms, such as PC, FCI, RFCI, PC-simple, IDA and Joint-IDA have achieved significant progress and have many…

Artificial Intelligence · Computer Science 2015-10-13 Thuc Duy Le , Tao Hoang , Jiuyong Li , Lin Liu , Shu Hu

We introduce cyclinbayes, an open-source R package for discovering linear causal relationships with both acyclic and cyclic structures. The package employs scalable Bayesian approaches with spike-and-slab priors to learn directed acyclic…

Computation · Statistics 2026-02-25 Robert Lee , Raymond K. W. Wong , Yang Ni
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