Related papers: Connecting tables with zero-one entries by a subse…
It is well-known that computing a Markov basis for a discrete loglinear model is very hard in general. Thus, we focus on connecting tables in a fiber via a subset of a Markov basis and in this paper, we consider connecting tables if we…
Minimal Markov bases of configurations of integer vectors correspond to minimal binomial generating sets of the assocciated lattice ideal. We give necessary and sufficient conditions for the elements of a minimal Markov basis to be (a)…
In this paper we study the computation of Markov bases for contingency tables whose cell entries have an upper bound. In general a Markov basis for unbounded contingency table under a certain model differs from a Markov basis for bounded…
We present a computational approach for generating Markov bases for multi-way contingency tables whose cells counts might be constrained by fixed marginals and by lower and upper bounds. Our framework includes tables with structural zeros…
We show that the complexity of the Markov bases of multidimensional tables stabilizes eventually if a single table dimension is allowed to vary. In particular, if this table dimension is beyond a computable bound, the Markov bases consist…
An intensive line of research on fixed parameter tractability of integer programming is focused on exploiting the relation between the sparsity of a constraint matrix $A$ and the norm of the elements of its Graver basis. In particular,…
It has been well-known that for two-way contingency tables with fixed row sums and column sums the set of square-free moves of degree two forms a Markov basis. However when we impose an additional constraint that the sum of a subtable is…
To calibrate Fourier analysis of $S_5$ ranking data by Markov chain Monte Carlo techniques, a set of moves (Markov basis) is needed. We calculate this basis, and use it to provide a new statistical analysis of two data sets. The calculation…
To evaluate a fitting of a statistical model to given data, calculating a conditional $p$ value by a Markov chain Monte Carlo method is one of the effective approaches. For this purpose, a Markov basis plays an important role because it…
We consider the connectivity of fiber graphs with respect to Gr\"obner basis and Graver basis moves. First, we present a sequence of fiber graphs using moves from a Gr\"obner basis and prove that their edge-connectivity is lowest possible…
In this paper we consider exact tests of a multiple logistic regression, where the levels of covariates are equally spaced, via Markov beses. In usual application of multiple logistic regression, the sample size is positive for each…
We present a new algorithm for computing a truncated Markov basis of a lattice. In general, this new algorithm is faster than existing methods. We then extend this new algorithm so that it solves the linear integer feasibility problem with…
In this paper, we introduce the fundamental notion of a Markov basis, which is one of the first connections between commutative algebra and statistics. The notion of a Markov basis is first introduced by Diaconis and Sturmfels (1998) for…
In this paper we characterize the unique graph whose algebraic connectivity is minimum among all connected graphs with given order and fixed matching number or edge covering number, and present two lower bounds for the algebraic…
We study how to lift Markov bases and Gr\"obner bases along linear maps of lattices. We give a lifting algorithm that allows to compute such bases iteratively provided a certain associated semigroup is normal. Our main application is the…
Assuming sufficiently many terms of a n-dimensional table defined over a field are given, we aim at guessing the linear recurrence relations with either constant or polynomial coefficients they satisfy. In many applications, the table terms…
A special class of braids, called woven, is introduced and it is shown that every conjugation class of the braid group contains woven braids. In consequence, links can be presented as plats or closures of woven braids. Restricting on knots,…
The methodology of Markov basis initiated by Diaconis and Sturmfels(1998) stimulated active research on Markov bases for more than ten years. It also motivated improvements of algorithms for Grobner basis computation for toric ideals, such…
Many data we collect today are in tabular form, with rows as records and columns as attributes associated with each record. Understanding the structural relationship in tabular data can greatly facilitate the data science process.…
In this paper we give an explicit and algorithmic description of Graver basis for the toric ideal associated with a simple undirected graph and apply the basis for testing the beta model of random graphs by Markov chain Monte Carlo method.