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Graphene nanochannels are relevant for their possible applications, as in water purification, and for the challenge of understanding how they change the properties of confined liquids. Here, we use all-atom molecular dynamics simulations to…

Soft Condensed Matter · Physics 2021-03-25 Carles Calero , Giancarlo Franzese

The structure of DNA double helix is stabilized by metal counterions condensed to a diffuse layer around the macromolecule. The dynamics of counterions in real conditions is governed by the electric fields from DNA and other biological…

Biological Physics · Physics 2020-10-27 O. O. Zdorevskyi , S. M. Perepelytsya

A numerical and systematic parameter study of three-dimensional vesicle electrohydrodynamics is presented to investigate the effects of different fluid and membrane properties. The dynamics of vesicles in the presence of DC electric fields…

Soft Condensed Matter · Physics 2016-05-24 Ebrahim M. Kolahdouz , David Salac

Upon the addition of multivalent cations, a giant DNA chain exhibits a large discrete transition from an elongated coil into a folded compact state. We performed single-chain observation of long DNAs in the presence of a tetravalent cation…

Soft Condensed Matter · Physics 2009-11-10 Takuya Saito , Takafumi Iwaki , Kenichi Yoshikawa

This work presents conclusive observations about the long lasting topic of eumelanins' electronic vs. ionic conduction, allowing to access unprecedented conductivity of this mammal pigment. Key strengths of the study include, the easy…

We have measured temperature dependent (between 20 and 80 C) electrical conductivity and molecular structure (Raman spectroscopy) of DNA-lipid cast film. Our findings show that the conductivity is strongly influenced by premelting effects…

Soft Condensed Matter · Physics 2007-05-23 A. Yu. Kasumov , S. Nakamae , M. Cazayous , T. Kawasaki , Y. Okahata

The condensational growth of spherical water microdroplets is studied in a laboratory setup and with a mathematical model. In the experiment, droplet clusters are kept in a freely levitated state within an upward-oriented flow of water…

Soft Condensed Matter · Physics 2019-06-25 Dmitrii N. Gabyshev , Alexander A. Fedorets , Nurken E. Aktaev , Otto Klemm , Stepan N. Andreev

Ion specificity and related Hofmeister effects, ubiquitous in aqueous systems, can have spectacular consequences in hydrated clays, where ion-specific nanoscale surface forces can determine large scale cohesive, swelling and shrinkage…

Soft Condensed Matter · Physics 2022-12-02 Francis Dragulet , Abhay Goyal , Katerina Ioannidou , Roland J. -M. Pellenq , Emanuela Del Gado

We present a detailed study of the optical absorption spectra of DNA bases and base pairs, carried out by means of time dependent density functional theory. The spectra for the isolated bases are compared to available theoretical and…

Materials Science · Physics 2007-05-23 D. Varsano , R. Di Felice , M. A. L. Marques , A. Rubio

The thermally induced denaturation of DNA in the presence of attractive solid surface is studied. The two strands of DNA are modeled via two coupled flexible chains without volume interactions. If the two strands are adsorbed on the…

Soft Condensed Matter · Physics 2015-05-13 A. E. Allahverdyan , Zh. S. Gevorkian , Chin-Kun Hu , Th. M. Nieuwenhuizen

The electrostatic contribution to twist rigidity of DNA is studied, and it is shown that the Coulomb self-energy of the double-helical sugar-phosphate backbone contributes considerably to twist rigidity of DNA--the electrostatic twist…

Soft Condensed Matter · Physics 2009-11-10 Farshid Mohammad-Rafiee , Ramin Golestanian

We develop a correlation-corrected transport theory in order to predict ionic and polymer transport properties of membrane nanopores in physical conditions where mean-field electrostatics breaks down. The experimentally observed low KCl…

Soft Condensed Matter · Physics 2014-11-06 Sahin Buyukdagli , Tapio Ala-Nissila

DNA is increasingly employed for bio and nanotechnology thanks to its exquisite versatility and designability. Most of its use is limited to linearised and torsionally relaxed DNA but non-trivial architectures and torsionally constrained --…

Soft Condensed Matter · Physics 2020-09-22 Jan Smrek , Davide Michieletto

An 1d model with time-dependent random hopping is proposed to describe charge transport in DNA. It admits to investigate both diffusion of electrons and their tunneling between different sites in DNA. The tunneling appears to be strongly…

Soft Condensed Matter · Physics 2009-11-07 E. I. Kats , V. V. Lebedev

We study the behavior of ambient temperature water under the combined effects of nanoscale confinement and applied electric field. Using molecular simulations we analyze the thermodynamic causes of field-induced expansion at some, and…

Soft Condensed Matter · Physics 2019-03-27 Dusan Bratko , Christopher D. Daub , Alenka Luzar

Studies of circular DNA confined to nanofluidic channels are relevant both from a fundamental polymer-physics perspective and due to the importance of circular DNA molecules in vivo. We here observe the unfolding of DNA from the circular to…

The control of the dielectric and conductive properties of device-level systems is important for increasing the efficiency of energy- and information-related technologies. In some cases, such as neuromorphic computing, it is desirable to…

Mesoscale and Nanoscale Physics · Physics 2020-07-28 Dimitrios Fraggedakis , Mohammad Mirzadeh , Tingtao Zhou , Martin Z. Bazant

We consider transport of dilute two-dimensional electrons, with temperature between Fermi and Debye temperatures. In this regime, electrons form a nondegenerate plasma with mobility limited by potential disorder. Different kinds of…

Mesoscale and Nanoscale Physics · Physics 2009-06-11 D. S. Novikov

We use a coarse-grained model of DNA-functionalized particles to understand the role of DNA chain length on their self-assembly. We find that the increasing chain length for a given particle size decreases the propensity to form ordered…

Soft Condensed Matter · Physics 2020-01-07 Runfang Mao , Jeetain Mittal

We develop a detailed analysis of electron transport in normal diffusive con- ductors in the presence of proximity induced superconductivity. A rich structure of temperature and energy dependencies for the system condcutcance, density of…

Condensed Matter · Physics 2007-05-23 A. D. Zaikin , F. K. Wilhelm , A. A. Golubov