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We propose the n-clique network as a powerful tool for understanding global structures of combined highly-interconnected subgraphs, and provide theoretical predictions for statistical properties of the n-clique networks embedded in a…

Physics and Society · Physics 2009-11-13 Kazuhiro Takemoto , Chikoo Oosawa , Tatsuya Akutsu

Random graph null models have found widespread application in diverse research communities analyzing network datasets, including social, information, and economic networks, as well as food webs, protein-protein interactions, and neuronal…

Methodology · Statistics 2017-10-12 Bailey K. Fosdick , Daniel B. Larremore , Joel Nishimura , Johan Ugander

The interactions between the components of complex networks are often directed. Proper modeling of such systems frequently requires the construction of ensembles of digraphs with a given sequence of in- and out-degrees. As the number of…

Physics and Society · Physics 2015-05-30 H. Kim , C. I. Del Genio , K. E. Bassler , Z. Toroczkai

Quantifying the similarity between two graphs is a fundamental algorithmic problem at the heart of many data analysis tasks for graph-based data. In this paper, we study the computational complexity of a family of similarity measures based…

Discrete Mathematics · Computer Science 2022-07-04 Timo Gervens , Martin Grohe

Network complexity has been studied for over half a century and has found a wide range of applications. Many methods have been developed to characterize and estimate the complexity of networks. However, there has been little research with…

Machine Learning · Statistics 2021-01-13 Yann Issartel

Random graph models are frequently used as a controllable and versatile data source for experimental campaigns in various research fields. Generating such data-sets at scale is a non-trivial task as it requires design decisions typically…

Data Structures and Algorithms · Computer Science 2020-03-03 Manuel Penschuck , Ulrik Brandes , Michael Hamann , Sebastian Lamm , Ulrich Meyer , Ilya Safro , Peter Sanders , Christian Schulz

Generalized mutual entropy is defined for networks and applied for analysis of complex network structures. The method is tested for the case of computer simulated scale free networks, random networks, and their mixtures. The possible…

Disordered Systems and Neural Networks · Physics 2009-11-13 V. Gudkov , V. Montealegre

We study the notion of approximate entropy within the framework of network theory. Approximate entropy is an uncertainty measure originally proposed in the context of dynamical systems and time series. We firstly define a purely structural…

Disordered Systems and Neural Networks · Physics 2013-05-30 James West , Lucas Lacasa , Simone Severini , Andrew Teschendorff

We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale…

Algebraic Topology · Mathematics 2024-05-24 Michael Kerber , Florian Russold

We study connected graphs with a fixed degree sequence, in the sparse setting where the number of edges grows linearly in the number of vertices. Using the relation to the configuration model, we identify the number of such connected graphs…

Combinatorics · Mathematics 2026-05-11 Sasha Bell , Serte Donderwinkel , Remco van der Hofstad

We provide a novel family of generative block-models for random graphs that naturally incorporates degree distributions: the block-constrained configuration model. Block-constrained configuration models build on the generalised…

Physics and Society · Physics 2021-02-24 Giona Casiraghi

Degree distributions of graph representations for compact urban patterns are scale-dependent. Therefore, the degree statistics alone does not give us the enough information to reach a qualified conclusion on the structure of urban spatial…

Physics and Society · Physics 2007-09-28 D. Volchenkov , Ph. Blanchard

Graphs are widely used for modeling various types of interactions, such as email communications and online discussions. Many of such real-world graphs are temporal, and specifically, they grow over time with new nodes and edges. Counting…

Social and Information Networks · Computer Science 2023-01-04 Deukryeol Yoon , Dongjin Lee , Minyoung Choe , Kijung Shin

Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…

Physics and Society · Physics 2012-06-11 Stefano Cardanobile , Volker Pernice , Moritz Deger , Stefan Rotter

We present an algorithm to grow a graph with scale-free structure of {\it in-} and {\it out-links} and variable wiring diagram in the class of the world-wide Web. We then explore the graph by intentional random walks using local…

Statistical Mechanics · Physics 2009-11-10 Bosiljka Tadic

In this paper we explore mathematical tools that can be used to relate directed and undirected random graph models to each other. We identify probability spaces on which a directed and an undirected graph model are equivalent, and…

Probability · Mathematics 2025-03-03 Mike van Santvoort , Pim van der Hoorn

There has been an increased interest in applying machine learning techniques on relational structured-data based on an observed graph. Often, this graph is not fully representative of the true relationship amongst nodes. In these settings,…

Machine Learning · Statistics 2022-08-05 Florence Regol , Soumyasundar Pal , Jianing Sun , Yingxue Zhang , Yanhui Geng , Mark Coates

Large graphs are sometimes studied through their degree sequences (power law or regular graphs). We study graphs that are uniformly chosen with a given degree sequence. Under mild conditions, it is shown that sequences of such graphs have…

Probability · Mathematics 2011-08-31 Sourav Chatterjee , Persi Diaconis , Allan Sly

Statistical ensembles of networks, i.e., probability spaces of all networks that are consistent with given aggregate statistics, have become instrumental in the analysis of complex networks. Their numerical and analytical study provides the…

Physics and Society · Physics 2016-08-09 Giona Casiraghi , Vahan Nanumyan , Ingo Scholtes , Frank Schweitzer

This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli