Related papers: A taylor-made arithmetic model of the genetic code…
In this paper, we describe a new hybrid algorithm for computing all singular triplets above a given threshold and provide its implementation in MATLAB/Octave and R. The high performance of our codes and ease at which they can be used,…
This paper characterizes the inherent power of evolutionary algorithms. This power depends on the computational properties of the genetic encoding. With some encodings, two parents recombined with a simple crossover operator can sample from…
A method for automatically finding a program (bytecode) realizing the given algorithm is developed. The algorithm is specified as a set of tests (input\_data) $ \rightarrow $ (output\_data). Genetic methods made it possible to find the…
When an external field is applied across a liquid-crystal cell, the twist and tilt distributions cannot be calculated analytically and must be extracted numerically. In the standard approach, the Euler-Lagrange equations are derived from…
We propose a new numerical algorithm for computing the tensor rank decomposition or canonical polyadic decomposition of higher-order tensors subject to a rank and genericity constraint. Reformulating this computational problem as a system…
Phylogenetic invariants are certain polynomials in the joint probability distribution of a Markov model on a phylogenetic tree. Such polynomials are of theoretical interest in the field of algebraic statistics and they are also of practical…
During our earlier research, it was recognised that in order to be successful with an indirect genetic algorithm approach using a decoder, the decoder has to strike a balance between being an optimiser in its own right and finding feasible…
We introduce new methods for phylogenetic tree quartet construction by using machine learning to optimize the power of phylogenetic invariants. Phylogenetic invariants are polynomials in the joint probabilities which vanish under a model of…
We introduce tropical complexes, as an enrichment of the dual complex of a degeneration with additional data from non-transverse intersection numbers. We define cycles, divisors, and linear equivalence on tropical complexes, analogous both…
We present a new algorithm for fast matrix multiplication using tensor decompositions which have special features. Thanks to these features we obtain exponents lower than what the rank of the tensor decomposition suggests. In particular for…
In this paper we describe a variation of the classical permutation decoding algorithm that can be applied to any affine-invariant code with respect to certain type of information sets. In particular, we can apply it to the family of…
The aim of this paper is to study the degenerate Bell numbers and polynomials which are degenerate version of the Bell numbers and polynomials. we derive some new identities and properties of those numbers and polynomials that are…
Natural numbers which are nontrivial multiples of some permutation of their base-$b$ digit representations are called permutiples. Specific cases include numbers which are multiples of cyclic permutations (cyclic numbers) and reversals of…
The mathematical concept of q-deformations, in particular the one of qnumbers, is used to study the genetic code(s). After considering two kinds of q-numbers, for comparison, a phenomenological classification scheme of the genetic code…
Beyond identifying genetic variants, we introduce a set of Boolean relations that allows for a comprehensive classification of the relations for every pair of variants by taking all minimal alignments into account. We present an efficient…
In this paper classical solutions of the degenerate fifth Painlev\'e equation are classified, which include hierarchies of algebraic solutions and solutions expressible in terms of Bessel functions. Solutions of the degenerate fifth…
In this paper, we investigate new class of sequences related to fully degenerate Bernoulli numbers and polynomials. From those sequences, we derive some formulae for the degenerate Bernoulli and Euler polynomials.
The group scheme of ternary automorphisms of a perfect finite dimensional evolution algebra A is computed. The main advantage of using group schemes is that it allows to apply the Lie functor to determine the Lie algebra of ternary…
In this paper, we propose a new erasure decoding algorithm for convolutional codes using the generator matrix. This implies that our decoding method also applies to catastrophic convolutional codes in opposite to the classic approach using…
For bivariate polynomials of degree $n\le 5$ we give fast numerical constructions of determinantal representations with $n\times n$ matrices. Unlike some other available constructions, our approach returns matrices of the smallest possible…